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. Author manuscript; available in PMC: 2021 Nov 1.
Published in final edited form as: Pediatr Emerg Care. 2020 Nov;36(11):e614–e619. doi: 10.1097/PEC.0000000000001414

Table 2.

ICD-9 Codes

Code Label
001.0–001.9 cholera
002.0–002.9 typhoid and paratyphoid fevers
003.0 salmonella gastroenteritis
003.20 localized salmonella infection, unspecified
003.29 other localized salmonella infections
003.8 other specified salmonella infections
003.9 salmonella infection, unspecified
004.0–004.9 shigellosis
005.0–005.9 other food poisoning (bacterial)
006.0 acute amebic dysentery without mention of abscess
006.1 chronic intestinal amebiasis without mention of abscess
006.2 amebic nondysenteric colitis
006.8 amebic infection of other sites
006.9 amebiasis, unspecified
007.0–007.9 other protozoal intestinal diseases
008.00–008.8 intestinal infections due to other organisms
009.0–009.3 ill-defined intestinal infections
034.0 streptococcal pharyngitis/tonsillitis
041.41–041.49 E. coli infection in conditions classified elsewhere and of unspecified site
041.82 bacteroides fragilis
041.83 other specified bacterial infections in conditions classified elsewhere and of unspecified site, Clostridium perfringens
042 HIV
054.10 genital herpes, unspecified (includes anal manifestations)
054.19 other genital herpes (includes anal manifestations)
054.2 herpetic gingivostomatitis
054.79 herpes simplex with other specified complications (includes acute herpes simplex pharyngitis)
054.8 herpes simplex with unspecified complication
054.9 herpes simplex without mention of complication
074.0 herpangina
078.5 cytomegaloviral disease
075 infectious mononucleosis
078.0 molluscum contagiosum
078.10–078.19 viral warts
078.88 other specified diseases due to chlamydiae
079.4 human papillomavirus in conditions classified elsewhere and of unspecified site
079.88 other specified chlamydial infection
079.98 unspecified chlamydial infection
091.1 primary anal syphilis
091.2 other primary syphilis (includes primary syphilis of tonsil and extragenital chancre)
091.3 secondary syphilis of skin or mucous membranes (includes secondary syphilis of anus, mouth, pharynx, tonsils)
091.7 other forms of secondary syphilis
095.8 other specified forms of late symptomatic syphilis: syphilitic gumma of palate/pharynx
097.0 late syphilis, unspecified
097.9 syphilis, unspecified
098.6 gonococcal infection of pharynx
098.7 gonococcal infection of anus and rectum
098.89 other gonococcal infection of other specified sites
099.50 other venereal diseases due to Chlamydia trachomatis, unspecified site
099.51 other venereal diseases due to Chlamydia trachomatis, pharynx
099.52 other venereal diseases due to Chlamydia trachomatis, anus and rectum
099.59 other venereal diseases due to Chlamydia trachomatis, other specified site
099.8 other specified venereal diseases
099.9 venereal disease, unspecified
112.0 candidiasis of mouth
112.84 candidal esophagitis
112.89 other candidiasis of other specified sites
112.9 candidiasis of unspecified site
122.3 echinococcus granulose infection, other
122.4 echinococcus granulosa infection, unspecified
122.6 echinococcus multilocularis infection, other
122.7 echinococcus multilocularis infection, unspecified
122.9 echinococcus, other and unspecified
123.0 taenia solium infection, intestinal form
124 trichinosis
126.0–126.9 ancylostomiasis and necatoriasis
127.0–127.9 other intestinal helminthiases
128.0–128.9 other and unspecified helminthiases
129 intestinal parasitism, unspecified
131.8 trichomonas specified site not otherwise classified (NEC)
131.9 trichomoniasis, unspecified
136.0–136.9 other and unspecified infectious and parasitic diseases
460 acute nasopharyngitis
462 acute pharyngitis
463 acute tonsillitis
464.00–464.51 acute laryngitis and tracheitis
465.0–465.9 acute upper respiratory infections of multiple or unspecified sites
472.1 chronic pharyngitis
472.2 chronic nasopharyngitis
474.00–474.02 Chronic tonsillitis and adenoiditis
474.8 other chronic disease of tonsils and adenoids
474.9 unspecified chronic disease of tonsils and adenoids
475 peritonsillar abscess
476.0–476.1 chronic laryngitis and laryngotracheitis
478.20–478.29 other diseases of pharynx not elsewhere classified
478.9 other and unspecified diseases of upper respiratory tract
487.1 influenza with other respiratory manifestations
487.8 influenza with other manifestations
488.01 influenza due to identified avian influenza virus with other respiratory manifestations
488.09 influenza due to identified avian influenza with other manifestations
488.12 influenza due to identified 2009 H1N1 influenza virus with other respiratory manifestations
488.19 influenza due to identified 2009 H1N1 influenza virus with other manifestations
488.82 influenza due to identified novel influenza A virus with other respiratory manifestations
488.89 influenza due to identified novel influenza A virus with other manifestations
555.0–555.9 regional enteritis
556.0–556.9 ulcerative enterocolitis
558.1–558.9 other and unspecified noninfectious gastroenteritis and colitis
564.1 irritable bowel syndrome
564.5 functional diarrhea
564.6 anal spasm
564.81–564.89 other specified functional disorders of intestine
564.9 unspecified functional disorder of intestine
565.0–565.1 anal fissure and fistula
566 abscess of anal and rectal regions
569.0–569.9 other disorders of intestine
578.1 blood in stool
578.9 hemorrhage of gastrointestinal tract, unspecified
579.0–579.9 intestinal malabsorption
680.5 carbuncle and furuncle of buttock
682.6 cellulitis and abscess of buttock
685.0–685.1 pilonidal cyst
686.8 other specified local infections of skin and subcutaneous tissue
686.9 unspecified local infection of skin and subcutaneous tissue
698.0 pruritis ani
698.2 prurigo
698.8 other specified pruritic conditions
698.9 unspecified pruritic disorder
784.1 throat pain
784.99 other symptoms involving head and neck
787.60–787.63 incontinence of feces
787.7 abnormal feces
787.91 diarrhea NOS
787.99 other symptoms involving digestive system
789.9 other symptoms involving abdomen and pelvis
792.1 nonspecific abnormal findings in stool contents
796.70–796.79 abnormal cytologic smear or anus and anal HPV