Table 6.

Comparison of circadian‐related contigs from the total assembly of SuperbaSE and equivalents found in KrillDB. Longest accepted candidate contig shown for each assembly. “Agreement” shows percentage of identical residues in the largest HSP in each search result alignment

Gene	Total assembly contig	Length	KrillDB contig	Length	Agreement (%)
Bmal1	ES.21_comp39465_seq0	1,150	ESS133965	303	100
Clock	ES.21_comp24303_seq0	1,903	ESS034516	1,795	100
Period	ES.23_comp19428_seq0	4,476	ESS133963	2,339	99
Timeless	ES.23_comp16712_seq0	3,415	ESS040526	4,047	99
Cryptochrome 1	ES.23_comp21133_seq0	1,100	ESS023688	1,819	99
Cryptochrome 2	ES.154212	2,146	ESS118473	1,855	100
Casein kinase IIA	ES.21_comp3643_seq1	2,556	ESS071624	1,825	91
Casein kinase IIB	ES.194593	1,276	ESS051147	805	97
Clockwork orange	ES.21_comp15386_seq1	2,301	ESS049809	2,111	95
Ctrip	ES.31_comp9752_seq0	8,148	ESS002511	2,454	100
Doubletime	ES.25_comp4349_seq1	2,480	ESS096454	1,925	91
Lark	ES.k31.S5232406	1,199	ESS098132	1,058	70
Nejire	ES.31_comp5882_seq0	6,924	ESS048098	2,180	98
Nemo	k21.S7956922	2,038	ESS021045	2,238	100
Par Domain Protein 1	ES.k41.J3781389	1,835	ESS017186	465	75
Pigment‐dispersing hormone	ES.k51.S2746663	387	ESS069399	362	93
PDH receptor	ES.21_comp12084_seq0	1,588	ESS048516	1,557	100
Protein phosphatase 1	ES.k51.J2636217	1,870	ESS073678	2,246	99
PP2A ‐ Microtubule star	ES.23_comp1445_seq0	2,263	ESS030735a	1,334	58
PP2A ‐ Twins	ES.21_comp997_seq2	3,375	ESS126945	2,979	100
PP2A ‐ Widerborst	ES.104836	4,190	ESS023456a	3,762	72
Rev‐erb/E75	ES.25_comp2884_seq0	3,602	ESS094384	3,620	99
Shaggy	ES.27_comp3209_seq0	2,222	ESS074789	1,350	96
Supernumerary limbs	ES.25_comp34876_seq0	1,843	ESS133964	1,350	100
Takeout	ES.21_comp3588_seq0	1,090	–	–	–
Timeout	ES.23_comp37221_seq0	3,067	ESS130300	2,078	99
Vrille	ES.25_comp4277_seq0	2,021	ESS123361	1,522	100

^aThese contigs were rejected as equivalent to the query contigs on visual inspection.