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. 2018 May 31;14(5):183–189. doi: 10.6026/97320630014183

Table 1. Results of MHC Class-II binding predictions of the linear B-cell epitope as predicted by BepiPred program.

HLA Allele (reference set) Peptide Method Used Percentile rank
Peptide: FAAGQSVVSVKLAGNSSLCPV (pandemic)
DRB1*08:02 AGQSVVSVKLAGNSS Consensus (smm/nn/sturniolo) 2.09
DRB1*08:02 GQSVVSVKLAGNSSL Consensus (smm/nn/sturniolo) 2.09
DRB1*08:02 QSVVSVKLAGNSSLC Consensus (smm/nn/sturniolo) 2.09
DRB1*08:02 SVVSVKLAGNSSLCP Consensus (smm/nn/sturniolo) 2.09
DRB1*08:02 VVSVKLAGNSSLCPV Consensus (smm/nn/sturniolo) 2.12
DRB1*08:02 AAGQSVVSVKLAGNS Consensus (smm/nn/sturniolo) 2.31
GDNPRPNDKTGSCGPVSSN (pandemic)
DQA1*05:01/DQB1*03:01 RPNDKTGSCGPVSSN Consensus (comb.lib./smm/nn) 21.87
DQA1*05:01/DQB1*03:01 PRPNDKTGSCGPVSS Consensus (comb.lib./smm/nn) 23.8
DQA1*05:01/DQB1*03:01 NPRPNDKTGSCGPVS Consensus (comb.lib./smm/nn) 49.93
DRB1*09:01 NPRPNDKTGSCGPVS Consensus (comb.lib./smm/nn) 55.3
DRB1*09:01 PRPNDKTGSCGPVSS Consensus (comb.lib./smm/nn) 55.3
DRB1*09:01 RPNDKTGSCGPVSSN Consensus (comb.lib./smm/nn) 55.3
VAGEDKTSVTLAGNSSLCSI (Seasonal)
DRB1*11:01 KTSVTLAGNSSLCSI Consensus (smm/nn/sturniolo) 3.79
DRB1*11:01 DKTSVTLAGNSSLCS Consensus (smm/nn/sturniolo) 3.94
DRB1*04:01 KTSVTLAGNSSLCSI Consensus (smm/nn/sturniolo) 4.34
DRB1*04:01 DKTSVTLAGNSSLCS Consensus (smm/nn/sturniolo) 4.47
DRB1*04:01 GEDKTSVTLAGNSSL Consensus (smm/nn/sturniolo) 8.45
DRB1*04:01 EDKTSVTLAGNSSLC Consensus (smm/nn/sturniolo) 8.83
GDNPRPEDGEGSCNPVTVD (Seasonal)
DQA1*05:01/DQB1*03:01 PRPEDGEGSCNPVTV Consensus (comb.lib./smm/nn) 31.48
DQA1*05:01/DQB1*03:01 RPEDGEGSCNPVTVD Consensus (comb.lib./smm/nn) 31.85
DQA1*05:01/DQB1*03:01 NPRPEDGEGSCNPVT Consensus (comb.lib./smm/nn) 36.71
DQA1*05:01/DQB1*03:01 GDNPRPEDGEGSCNP Consensus (comb.lib./smm/nn) 46.46
DQA1*05:01/DQB1*03:01 DNPRPEDGEGSCNPV Consensus (comb.lib./smm/nn) 46.46
DQA1*03:01/DQB1*03:02 RPEDGEGSCNPVTVD Consensus (comb.lib./smm/nn) 46.61
SDILLKFSPTEITAPTMPL (Influenza B)
DRB1*09:01 SDILLKFSPTEITAP Consensus (comb.lib./smm/nn) 0.68
DRB1*09:01 DILLKFSPTEITAPT Consensus (comb.lib./smm/nn) 0.93
DRB1*09:01 ILLKFSPTEITAPTM Consensus (comb.lib./smm/nn) 1.69
DRB1*15:01 SDILLKFSPTEITAP Consensus (smm/nn/sturniolo) 2.01
DRB1*15:01 DILLKFSPTEITAPT Consensus (smm/nn/sturniolo) 2.96
DRB1*07:01 SDILLKFSPTEITAP Consensus (comb.lib./smm/nn) 3.08
TKGVTLLLPEPEWTYPRLSCP (Influenza B)
DRB1*04:05 TKGVTLLLPEPEWTY Consensus (smm/nn/sturniolo) 2.14
DRB1*04:05 KGVTLLLPEPEWTYP Consensus (smm/nn/sturniolo) 2.54
DQA1*04:01/DQB1*04:02 TKGVTLLLPEPEWTY Consensus (comb.lib./smm/nn) 2.93
DQA1*04:01/DQB1*04:02 KGVTLLLPEPEWTYP Consensus (comb.lib./smm/nn) 4.27
DRB1*04:05 GVTLLLPEPEWTYPR Consensus (smm/nn/sturniolo) 4.7
DRB1*04:05 VTLLLPEPEWTYPRL Consensus (smm/nn/sturniolo) 7.06