Table 4. ANOVA analysis of single agent activity# or fraction cells affected at 24 hours.
Cell type | HEK-293 | TC-32 | CHLA-10 | T-Test | |
---|---|---|---|---|---|
Antisense Target | 0.3 µM | 3.0 µM† | 0.3 µM | HEK vs TC-32 | HEK vs CHLA-10 |
XAGE1E | −0.09 ± 0.06* | 0.19 ± 0.10 | 0.59 ± 0.18 | 0.0001 | 0.0000 |
CCND1 | 0.03 ± 0.04 | 0.05 ± 0.04 | 0.45 ± 0.07 | 0.2932 | 0.0000 |
RBM11 | −0.15 ± 0.05 | 0.10 ± 0.04 | 0.37 ± 0.05 | 0.0000 | 0.0000 |
CYP4F22-1 | −0.02 ± 0.02 | 0.13 ± 0.05 | 0.10 ± 0.07 | 0.0000 | 0.0076 |
CYP4F22-2 | −0.02 ± 0.09 | 0.17 ± 0.07 | 0.18 ± 0.07 | 0.0016 | 0.0023 |
CYP4F22-3 | −0.07 ± 0.04 | 0.24 ± 0.10 | 0.06 ± 0.04 | 0.0000 | 0.0004 |
PHGDH-1 | 0.08 ± 0.08 | 0.22 ± 0.18 | 0.34 ± 0.22 | 0.0337 | 0.0341 |
PHGDH-2 | 0.09 ± 0.03 | 0.20 ± 0.08 | 0.30 ± 0.07 | 0.0006 | 0.0002 |
IGFBP2-1 | 0.03 ±0.07 | 0.18 ±0.05 | 0.28 ± 0.11 | 0.0027 | 0.0014 |
IGFBP2-2 | 0.02 ± 0.02 | 0.30 ± 0.21 | 0.25 ± 0.08 | 0.0007 | 0.0004 |
IGFBP2-3 | 0.03 ± 0.07 | 0.14 ± 0.04 | 0.50 ± 0.15 | 0.0151 | 0.0002 |
IGFBP2-4 | 0.02 ± 0.02 | 0.19 ± 0.05 | 0.42 ± 0.16 | 0.0000 | 0.0015 |
ANOVA | F = 3.1; ns | F = 5.6; p < 0.01 | F = 9.3; p < 0.01 |
#Fraction Dead Cells at 24 hours (FA24 hs); FA24 hrs was calculated for single agents using the fraction of cells lost among 5 replicate samples, corrected to the average fraction of cells lost when treated with the highest a scramble control morpholino (for doses ranging from 0.1 to 3 µM) + 10 µM Endo-Porter; Replicates were and controls were measured in the same 96-well seeded with the identical number of healthy cells 24 hours prior to treatment.
*HEK293 cells show no significant fraction affected cells at 0.3 µM for any antisense agent.
†TC-32 cells were resistant to Endo-Porter based morpholino uptake and showed peak cytotoxicity at the 3.0 µM dose delivered with passive uptake. CHLA-10 cells showed peak cytotoxicity at a 0.3 µM dose with Endo-Porter.