Table 1.
Summary of transcriptome data generated from adventitious roots of Cheongsun (CS) Panax ginseng cultivars.
CS adventitious roots | Raw data | Filtered data | SRA accession no. | ||
---|---|---|---|---|---|
Total no. of reads | Length (bp) | Total no. of reads | Length (bp) | ||
CS, replicate 1* | 16,731,664 | 2,321,621,040 | 15,291,398 | 2,115,447,628 | SRR2132332 |
CS, replicate 2* | 14,306,820 | 1,977,938,763 | 12,831,592 | 1,766,225,247 | SRR1688723 |
CS, replicate 3* | 14,801,822 | 2,056,937,756 | 13,407,302 | 1,857,154,376 | SRR2132333 |
CS, 12 h replicate 1 | 13,820,382 | 1,893,236,025 | 12,221,130 | 1,665,343,695 | SRR6384120 |
CS, 12 h replicate 2 | 13,549,482 | 1,889,923,163 | 11,912,380 | 1,655,061,269 | SRR6384121 |
CS, 12 h replicate 3 | 14,884,004 | 1,951,092,722 | 12,996,188 | 1,689,391,983 | SRR6384122 |
CS, 24 h replicate 1 | 13,708,904 | 1,903,958,122 | 12,125,782 | 1,677,279,963 | SRR6384123 |
CS, 24 h replicate 2 | 14,492,432 | 2,015,422,717 | 12,732,674 | 1,762,648,809 | SRR6384124 |
CS, 24 h replicate 3 | 13,891,838 | 1,927,722,530 | 12,173,452 | 1,681,509,097 | SRR6384125 |
CS, 48 h replicate 1 | 11,055,530 | 1,531,553,431 | 9,669,218 | 1,333,220,591 | SRR6384126 |
CS, 48 h replicate 2 | 14,083,014 | 1,945,787,757 | 12,425,406 | 1,709,114,504 | SRR6384127 |
CS, 48 h replicate 3 | 15,591,720 | 2,160,145,356 | 13,525,934 | 1,864,372,366 | SRR6384128 |
Total | 170,917,612 | 23,575,339,382 | 151,312,456 | 20,776,769,528 |
*Replicated transcriptomes of CS obtained from a previous report38.