Table 1.
Statistics of RNA-seq reads and mapped reads
| Samplesa | Total raw reads | Total clean reads | Total clean nucleotides (bp) | Mapped reads (%) | Uniquely mapped reads (%) |
|---|---|---|---|---|---|
| AA-R1 | 63,235,082 | 62,967,506 | 8,973,601,893 | 76.7 | 68.4 |
| AA-R2 | 69,562,114 | 68,900,748 | 10,037,616,256 | 75.6 | 68.2 |
| AA-R3 | 32,752,136 | 30,728,480 | 4,609,272,000 | 65.3 | 60.0 |
| CC-R1 | 50,069,024 | 49,125,050 | 7,075,517,555 | 80.3 | 73.1 |
| CC-R2 | 69,523,248 | 68,890,164 | 9,995,606,828 | 81.3 | 46.8 |
| CC-R3 | 36,039,320 | 32,996,098 | 4,949,414,700 | 64.1 | 59.1 |
| AACC-R1 | 52,560,640 | 51,651,956 | 7,414,992,385 | 76.1 | 70.0 |
| AACC -R2 | 48,235,332 | 47,798,278 | 6,801,312,765 | 77.5 | 60.0 |
| AACC -R3 | 32,380,872 | 30,379,484 | 4,556,922,600 | 63.1 | 58.2 |
| Total | 454,357,768 | 443,437,764 | 64,414,256,982 | – | – |
| Average | 50,484,196 | 49,270,863 | 7,157,139,665 | 73.3 | 62.6 |
aR1, R2 and R3 are three biological replicates; AA, B. rapa (cv. Yangzhouqing); CC, B. oleracea (cv. Yonglv 7); AACC, resynthesized allotetraploid B. napus