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. 2018 Aug 6;217(8):2951–2974. doi: 10.1083/jcb.201804042

Table 3. Basal cells: Identified HOMER motifs and corresponding transcription factor names.

HOMER motif Name h-Me ATAC-seq
p63(p53)/Keratinocyte-p63-ChIP-Seq TP63 Yes Yes
p53(p53)/Saos-p53-ChIP-Seq TP53 Yes Yes
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq NF1-halfsite Yes No
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350) TEAD4 Yes No
Pax8(Paired/Homeobox)/Rat-Pax8-ChIP-Seq PAX8 Yes No
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq TCF4 Yes No
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824) AR-halfsite Yes No
X-box(HTH)/NPC-H3K4me1-ChIP-Seq X-BOX(HTH) Yes No
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196) TCF7L2 Yes No
NF1(CTF)/LNCAP-NF1-ChIP-Seq NFIB Yes No
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738) TFAP4 Yes No
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477) RFX5 Yes No
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254) EGR2 Yes Yes
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq NFATC1 Yes No
EGR(Zf)/K562-EGR1-ChIP-Seq EGR1 Yes Yes
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq TEAD Yes No
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq ATOH1 Yes No
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq RELA Yes No
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq PPARG Yes No
Tcf3(HMG)/mES-Tcf3-ChIP-Seq TCF3 Yes No
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512) FOS No Yes
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq JUN No Yes