Table 5. Torsion angles and energies of K-5a2 and 25a in different binding poses.
Torsion angles (°) | NNRTI energy*
(kcal/mol) |
||||||||
---|---|---|---|---|---|---|---|---|---|
τ1 | τ2 | τ3 | τ4 | τ5 | τ6 | τ7 | τ8 | ||
WT RT/K-5a2 | 14 | −17 | −84 | −71 | 2 | −8 | −97 | — | −161.4 |
K103N RT/K-5a2 | 11 | −23 | −83 | −73 | 6 | −11 | −102 | — | −162.4 |
E138K RT/K-5a2 | 9 | −19 | −87 | −68 | 2 | −9 | −97 | — | −162.7 |
Y188L RT/K-5a2 | 3 | −49 | −66 | −70 | 4 | −2 | −94 | — | −160.9 |
WT RT/ETR† | — | — | — | 16 | −2 | −13 | −95 | — | N/A |
WT RT/25a | 23 | −26 | −79 | −79 | 1 | 0 | −109 | −40 | −191.1 |
K103N RT/25a | 7 | −22 | −81 | −74 | 3 | 0 | −110 | −53 | −187.7 |
E138K RT/25a | 19 | −29 | −76 | −77 | 0 | 3 | −108 | −53 | −188.5 |
K103N/Y181C RT/25a | −4 | −26 | −76 | −77 | 4 | −1 | −107 | −54 | −186.2 |
V106A/F227L RT/25a | 14 | −24 | −72 | −82 | 4 | −4 | −103 | −163 | −187.3 |
K101P RT/25a | 5 | −24 | −84 | −81 | 5 | 6 | −112 | −44 | −190.1 |
Y181I RT/25a | −2 | −15 | −87 | −72 | 6 | 4 | −107 | −57 | −189.2 |
WT RT/RPV‡ | — | — | — | 10 | −7 | −13 | −103 | −28 | N/A |
* The NNRTI energy refers to the energy of K-5a2 or 25a itself at the specific conformations in different RT complexes. It was calculated using the MacroModel program in the Schrödinger software suite.
† Torsion angles of ETR were measured using the structure from PDB ID: 3MEC.
‡ Torsion angles of RPV were measured using the structure from PDB ID: 4G1Q.