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. 2018 Jul 25;7:e36340. doi: 10.7554/eLife.36340

Table 5. Torsion angles and energies of K-5a2 and 25a in different binding poses.

Torsion angles (°) NNRTI energy*
(kcal/mol)
τ1 τ2 τ3 τ4 τ5 τ6 τ7 τ8
 WT RT/K-5a2 14 −17 −84 −71 2 −8 −97 −161.4
 K103N RT/K-5a2 11 −23 −83 −73 6 −11 −102 −162.4
 E138K RT/K-5a2 9 −19 −87 −68 2 −9 −97 −162.7
 Y188L RT/K-5a2 3 −49 −66 −70 4 −2 −94 −160.9
 WT RT/ETR 16 −2 −13 −95 N/A
 WT RT/25a 23 −26 −79 −79 1 0 −109 −40 −191.1
 K103N RT/25a 7 −22 −81 −74 3 0 −110 −53 −187.7
 E138K RT/25a 19 −29 −76 −77 0 3 −108 −53 −188.5
 K103N/Y181C RT/25a −4 −26 −76 −77 4 −1 −107 −54 −186.2
 V106A/F227L RT/25a 14 −24 −72 −82 4 −4 −103 −163 −187.3
 K101P RT/25a 5 −24 −84 −81 5 6 −112 −44 −190.1
 Y181I RT/25a −2 −15 −87 −72 6 4 −107 −57 −189.2
 WT RT/RPV 10 −7 −13 −103 −28 N/A

* The NNRTI energy refers to the energy of K-5a2 or 25a itself at the specific conformations in different RT complexes. It was calculated using the MacroModel program in the Schrödinger software suite.

† Torsion angles of ETR were measured using the structure from PDB ID: 3MEC.

‡ Torsion angles of RPV were measured using the structure from PDB ID: 4G1Q.