Table 3.
QTL information for plant height and technical length in two populations
| QTL name | LG | Position | Closet marker | LOD | Additive | R2 | LOD2_L | LOD2_R | Trait | Environment | Candidate gene | Gene annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MH population | ||||||||||||
| uq.C1–1 | 1 | 28.51 | Lu1_695389 | 3.71 | 1.57 | 12.76 | 27.5 | 30.5 | TL | Yuanmou | Lus10012562,Lus10016188 | Unknown function; COBRA-like protein |
| uq.C4–1 | 4 | 24.41 | Lu4_300701 | 3.07 | 2.28 | 25.7 | 24.1 | 24.4 | PH | Langfang | Lus10041481 | Multicopper oxidase |
| uq.C5–1 | 5 | 52.51 | Lu5_8504 | 3.89 | 1.95 | 25.31 | 52.2 | 53.3 | PH,TL | Langfang, Jingtai | Lus10007137 | large subunit ribosomal protein L13Ae |
| uq.C6–1 | 6 | 19.81 | Lu6_639236 | 3.63 | 1.79–2.03 | 16.21–22.47 | 17.8 | 24 | PH,TL | Yuanmou | Lus10034082,Lus10017587, Lus10019435 | Proline-rich receptor-like protein kinase perk; carboxylesterase 17-related;oxidoreductase |
| uq.C8–1 | 8 | 10.11 | Lu8_646184 | 3.62 | 1.25 | 8.16 | 9.6 | 10.4 | TL | Jingtai | Lus10011957 | nucleosome assembly protein 1-like 1 |
| uq.C8–2 | 8 | 81.21 | Lu8_185009 | 5.09 | −2.16 | 19.08 | 80.6 | 82.1 | PH,TL | Jingtai | ||
| uq.C8–3 | 8 | 93.41 | Lu8_119488 | 3.14 | −1.97 | 25.98 | 92.2 | 96.5 | PH | Langfang | Lus10012249,Lus10012252 | fanconi anemia group J protein;high mobility group protein 2-related |
| uq.C11–1 | 11 | 46.91 | Lu11_557617 | 3.3 | −1.88 | 22.19 | 46.6 | 47.7 | PH | Langfang | Lus10038920 | monocopper oxidase-like protein sks1-related |
| uq.C12–1 | 12 | 34.31 | Lu12_696508 | 2.7–4.8 | −4.53 | 18.71–23.54 | 2.8 | 36.7 | PH,TL | Langfang, Lanzhou, Yuanmou | Lus10036228,Lus10036227,Lus10036229, Lus10036247,Lus10023392 | Ribosomal protein L7/L12-related; UDP-N-acetylglucosamine pyrophosphorylase; choline-phosphate cytidylyltransferase; F21O3.9 Protein-related;protein LSD1 |
| uq.C14–1 | 14 | 32.61 | Lu14_231853 | 3.94–7.26 | 2.56–3.08 | 20.62–26.94 | 32 | 33.1 | PH, TL | Langfang,Lanzhou, Yuanmou | Lus10015608,Lus10015614 | MYB domain protein 26; insoluble isoenzyme cwinv1-related |
| PH population | ||||||||||||
| uq.C1–1 | 1 | 17.61 | Lu1_396428 | 3.79 | −1.84 | 21.11 | 16.2 | 17.9 | PH | Langfang | Lus10027782,Lus10016188, Lus10027887 | Laccase-10-related;COBRA-related protein 6; Wax ester synthase-like Acyl-CoA acyltransferase domain; Wax ester synthase-like Acyl-CoA acyltransferase domain |
| uq.C2–2 | 2 | 96.71 | Lu2_597057 | 6.79 | 1.77 | 10.29 | 94.6 | 97.9 | TL | Jingtai | Lus10014561,Lus10014535, Lus10030692 | glycosylphosphatidylinositol transamidase; Formate dehydrogenase |
| uq.C3–1 | 3 | 23.41 | Lu3_693423 | 4.05 | −2.42 | 20.53 | 20.9 | 24.2 | PH | Lanzhou | ||
| uq.C7–1 | 7 | 12.31 | Lu7_781312 | 3.04 | 3.67 | 73.41 | 5.8 | 15.7 | TL | Yuanmou | ||
| uq.C9–1 | 9 | 41.41 | Lu9_503128 | 6.43 | 2.68 | 21.83 | 40.9 | 46.4 | PH | Yuanmou, Langfang | Lus10002031,Lus10015623 | Unknown function; fatty acid omega-hydroxy dehydrogenase |
| uq.C9–2 | 9 | 56.21 | Lu9_618122 | 3.43 | 1.22 | 10.53 | 51.9 | 58.7 | TL | Jingtai | ||
| uq.C11–1 | 11 | 37.41 | Lu11_447048 | 4.54 | −2.32 | 22.91 | 36.9 | 38 | PH | Langfang | Lus10038920 | monocopper oxidase-like protein sks1-related |
| uq.C12–1 | 12 | 2.01 | Lu12_163596 | 3.44 | −2.23 | 21.84 | 0 | 3.6 | PH | Lanzhou | Lus10031416 | Nicotianamine synthase |
| uq.C13–1 | 13 | 54.91 | Lu13_367183 | 3.34 | 3.21 | 68.2 | 53.8 | 56.7 | PH | Yuanmou | Lus10026439,Lus10026441 | Threonine-specific protein kinase; peptidyl-prolyl cis-trans isomerase SDCCAG10 |
LOD2_L/R: Confidence interval in 95% significance level; TL: technical length; PH: Plant height