Table 5. An approach to select DEGs (protein coding genes) identified by UQ-pgQ2* and DESeq2.

	Common	UQ-pgQ2*	DESeq2	Total
TNBC	1,546	38 (|logFC|≥2)	109 (|logFC|≥2.5)	1,693
ER+HER2-BC	2,212	3 (|logFC|≥2)	84 (|logFC|≥2)	2,299

UQ-pgQ2*: UQ-pgQ2 normalization and Wald test from DESeq2.