REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Bacterial Strains | ||
Rosetta 2(DE3) E. coli strain | Novagen | Cat# 71397-3 |
Rosetta 2 (DE3) pLysS E. coli strain | Novagen | Cat# 71403 |
Chemicals, Peptides, and Recombinant Proteins | ||
BS3 (bis(sulfosuccinimidyl)suberate) | Thermo Fisher Scientific | Cat# 21580 |
Sulfo-SMCC (sulfosuccinimidyl 4-(N-maleimidomethyl) cyclohexane-1-carboxylate) | Thermo Fisher Scientific | Cat# 22322 |
N,N-Dimethyl-p-phenylenediamine | Sigma Aldrich | Cat# 193992 |
Dithiothreitol (DTT) | US Biological | Cat# D8070 |
Sodium sulfide | Sigma Aldrich | Cat# 208043 |
L-Cysteine | Sigma Aldrich | Cat# W326305 |
4-(2-Hydroxyethyl)piperazin-1-ylethanesulfonic acid (HEPES) | VWR | Cat# 97061-826 |
Tris (2-Carboxyethyl) phosphine Hydrochloride (TCEP) | UBPBio | Cat# P1020-100 |
Iron(III) chloride | Sigma Aldrich | Cat# 157740 |
Trifluoroacetic acid (TFA) | Sigma Aldrich | Cat# T6508 |
Trypsin | Sigma Aldrich | Cat# T1426 |
Endoproteinase Glu-C | Sigma Aldrich | Cat# P6181 |
Human NFS1 | This paper | Uniprot Q9Y697 |
Human ISCU | This paper | Uniprot Q9H1K1 |
Human ISD11 | This paper | Uniprot Q9HD34 |
E. coli acyl carrier protein (Acp) | This paper | Cat# 21580 |
Human frataxin (FXN) | This paper | Cat# 22322 |
Oligonucleotides | ||
Primers for
ISCU: 5′:ACTAGTGGTACCGGTCTCAAGGT CTAAAAATGTTGGAACTGGACTGG 3′:GGGCCCGCTCGAGGGATCCTCATTA TTTCTTCTCTGCCTCTCCTTTTTTG |
IDT https://www.idtdna.com/pages | N/A |
Primers for
NFS1: 5′:ACTAGTGGTACCGGTCTCAAGGT GGGCCAGTGCTGCGACCTCTCTATATG 3′:GGGCCCGCTCGAGGGATCCTCATTA GTGTTGGGTCCACTTGATGCT |
IDT https://www.idtdna.com/pages | N/A |
Primers for
FXN: 5′:ACTAGTGGTACCGGTCTCAAGGT TCTGGAACTTTGGGCCACCCAGGC 3′:GGGCCCGCTCGAGGGATCCTCATTA TCAAGCATCTTTTCCGGAATAGGC |
IDT https://www.idtdna.com/pages | N/A |
Primers for
ISD11: 5′:GAAGGAGATATACC ATGGCAGCCTCCAGTCGCGCACAA 3′:GGATCCTCGAGCTC TTAATGGTGATGGTGATGGTGTTTGGTCCTGGG CATGTCTCGATTC |
IDT https://www.idtdna.com/pages | N/A |
Recombinant DNA | ||
cDNA of NFS1, ISD11, ISCU and frataxin | Mammalian Gene Collection | N/A |
Plasmid: pET-SUMO, pET14b | This paper | N/A |
Experimental Models: Constituents of Protein Complexes | ||
Homo sapiens NFS1 | This paper | UniProt: Q9Y697 (53-457) |
Homo sapiens ISD11 | This paper | UniProt: Q9HD34 |
Homo sapiens frataxin | This paper | UniProt: Q16595 (81-210) |
Escherichia coli acyl carrier protein | This paper | UniProt: P0A6A8 |
Deposited Data | ||
SAXS for (NIA)2 | This paper | SASDB: SASDDB3 |
SAXS for (NIAU)2 | This paper | SASDB: SASDDC3 |
SAXS for (NIAUF)2 | This paper | SASDB: SASDDD3 |
NMR chemical shift data | This paper | BMRB: 27171 |
MS data | This paper | PRIDE: PSD006938, PSD006928, PSD009079 |
Structural model (NIAUF)2 | This paper | PDBdev: PDB_DEV00000015 |
Software and Algorithms | ||
ATSAS | (Franke et al., 2017) | https://www.embl-hamburg.de/biosaxs/software.html |
DAMIF | (Franke and Svergun, 2009) | https://www.embl-hamburg.de/biosaxs/dammif.html |
DAMAVER | (Volkov and Svergun, 2003) | https://www.embl-hamburg.de/biosaxs/damaver.html |
CRYSOL from PRIMUS in ATSAS 2.8.1 | (Svergun et al., 1995) | https://www.embl-hamburg.de/biosaxs/crysol.html |
SUPCOMB | (Kozin and Svergun, 2001) | https://www.embl-hamburg.de/biosaxs/supcomb.html |
Stavrox | (Gotze et al., 2012) | https://www.stavrox.com/ |
HADDOCK | (van Zundert et al., 2016) | https://haddock.science.uu.nl/services/HADDOCK2.2/ |
Mascot | Matrixscience | http://www.matrixscience.com/search_form_select.html |
FoXS | (Schneidman-Duhovny et al., 2016) | https://modbase.compbio.ucsf.edu/foxs/ |
SAXS | Bruker | https://www.bruker.com/ |
ProtParam | (Wilkins et al., 1999) | |
PyMOL | Schrödinger | https://pymol.org/2/ |