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. Author manuscript; available in PMC: 2019 Aug 7.
Published in final edited form as: Structure. 2018 Jul 5;26(8):1127–1136.e4. doi: 10.1016/j.str.2018.05.017
REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial Strains
Rosetta 2(DE3) E. coli strain Novagen Cat# 71397-3
Rosetta 2 (DE3) pLysS E. coli strain Novagen Cat# 71403
Chemicals, Peptides, and Recombinant Proteins
BS3 (bis(sulfosuccinimidyl)suberate) Thermo Fisher Scientific Cat# 21580
Sulfo-SMCC (sulfosuccinimidyl 4-(N-maleimidomethyl) cyclohexane-1-carboxylate) Thermo Fisher Scientific Cat# 22322
N,N-Dimethyl-p-phenylenediamine Sigma Aldrich Cat# 193992
Dithiothreitol (DTT) US Biological Cat# D8070
Sodium sulfide Sigma Aldrich Cat# 208043
L-Cysteine Sigma Aldrich Cat# W326305
4-(2-Hydroxyethyl)piperazin-1-ylethanesulfonic acid (HEPES) VWR Cat# 97061-826
Tris (2-Carboxyethyl) phosphine Hydrochloride (TCEP) UBPBio Cat# P1020-100
Iron(III) chloride Sigma Aldrich Cat# 157740
Trifluoroacetic acid (TFA) Sigma Aldrich Cat# T6508
Trypsin Sigma Aldrich Cat# T1426
Endoproteinase Glu-C Sigma Aldrich Cat# P6181
Human NFS1 This paper Uniprot Q9Y697
Human ISCU This paper Uniprot Q9H1K1
Human ISD11 This paper Uniprot Q9HD34
E. coli acyl carrier protein (Acp) This paper Cat# 21580
Human frataxin (FXN) This paper Cat# 22322
Oligonucleotides
Primers for ISCU:
5′:ACTAGTGGTACCGGTCTCAAGGT
CTAAAAATGTTGGAACTGGACTGG
3′:GGGCCCGCTCGAGGGATCCTCATTA
TTTCTTCTCTGCCTCTCCTTTTTTG
IDT https://www.idtdna.com/pages N/A
Primers for NFS1:
5′:ACTAGTGGTACCGGTCTCAAGGT
GGGCCAGTGCTGCGACCTCTCTATATG
3′:GGGCCCGCTCGAGGGATCCTCATTA
GTGTTGGGTCCACTTGATGCT
IDT https://www.idtdna.com/pages N/A
Primers for FXN:
5′:ACTAGTGGTACCGGTCTCAAGGT
TCTGGAACTTTGGGCCACCCAGGC
3′:GGGCCCGCTCGAGGGATCCTCATTA
TCAAGCATCTTTTCCGGAATAGGC
IDT https://www.idtdna.com/pages N/A
Primers for ISD11:
5′:GAAGGAGATATACC
ATGGCAGCCTCCAGTCGCGCACAA
3′:GGATCCTCGAGCTC
TTAATGGTGATGGTGATGGTGTTTGGTCCTGGG
CATGTCTCGATTC
IDT https://www.idtdna.com/pages N/A
Recombinant DNA
cDNA of NFS1, ISD11, ISCU and frataxin Mammalian Gene Collection N/A
Plasmid: pET-SUMO, pET14b This paper N/A
Experimental Models: Constituents of Protein Complexes
Homo sapiens NFS1 This paper UniProt: Q9Y697 (53-457)
Homo sapiens ISD11 This paper UniProt: Q9HD34
Homo sapiens frataxin This paper UniProt: Q16595 (81-210)
Escherichia coli acyl carrier protein This paper UniProt: P0A6A8
Deposited Data
SAXS for (NIA)2 This paper SASDB: SASDDB3
SAXS for (NIAU)2 This paper SASDB: SASDDC3
SAXS for (NIAUF)2 This paper SASDB: SASDDD3
NMR chemical shift data This paper BMRB: 27171
MS data This paper PRIDE: PSD006938, PSD006928, PSD009079
Structural model (NIAUF)2 This paper PDBdev: PDB_DEV00000015
Software and Algorithms
ATSAS (Franke et al., 2017) https://www.embl-hamburg.de/biosaxs/software.html
DAMIF (Franke and Svergun, 2009) https://www.embl-hamburg.de/biosaxs/dammif.html
DAMAVER (Volkov and Svergun, 2003) https://www.embl-hamburg.de/biosaxs/damaver.html
CRYSOL from PRIMUS in ATSAS 2.8.1 (Svergun et al., 1995) https://www.embl-hamburg.de/biosaxs/crysol.html
SUPCOMB (Kozin and Svergun, 2001) https://www.embl-hamburg.de/biosaxs/supcomb.html
Stavrox (Gotze et al., 2012) https://www.stavrox.com/
HADDOCK (van Zundert et al., 2016) https://haddock.science.uu.nl/services/HADDOCK2.2/
Mascot Matrixscience http://www.matrixscience.com/search_form_select.html
FoXS (Schneidman-Duhovny et al., 2016) https://modbase.compbio.ucsf.edu/foxs/
SAXS Bruker https://www.bruker.com/
ProtParam (Wilkins et al., 1999)
PyMOL Schrödinger https://pymol.org/2/