Table 5. Correlation between environmental factors, virulotypes and resistotypes with composition phylogenetic relationship inferred using REP-PCR and PFGE.
| Species | Subjects | Factorsa | Composite of PFGE and REP-PCR | |
|---|---|---|---|---|
| Pseudo F | P | |||
| E. faecalis | Pigs | Region | 26.229 | 0.001 |
| Hygiene practice | 24.392 | 0.001 | ||
| Sample matrix | 5.6083 | 0.001 | ||
| Resistotypes | 2.8807 | 0.014 | ||
| Virulotypes | 4.7217 | 0.001 | ||
| Biofilm | 1.3114 | 0.244 | ||
| Humans | Region | 4.9953 | 0.001 | |
| Hygiene practice | 0.5268 | 0.767 | ||
| Sample matrix | 1.7178 | 0.126 | ||
| Resistotypes | 2.3653 | 0.048 | ||
| Virulotypes | 6.0838 | 0.001 | ||
| Biofilm | 1.1187 | 0.361 | ||
| E. faecium | Pigs | Region | 9.3722 | 0.001 |
| Hygiene practice | 7.7394 | 0.001 | ||
| Sample matrix | 0.2937 | 0.902 | ||
| Resistotypes | 1.6440 | 0.159 | ||
| Virulotypes | 4.5310 | 0.006 | ||
| Biofilm | 2.2920 | 0.055 | ||
| Humans | Region | 6.7071 | 0.001 | |
| Hygiene practice | 2.8370 | 0.050 | ||
| Sample matrix | 4.7811 | 0.010 | ||
| Resistotypes | 2.6958 | 0.046 | ||
| Virulotypes | 2.9966 | 0.037 | ||
| Biofilm | 4.4749 | 0.007 | ||
Notes.
a
Subject, human host and swine host; Biofilm refers to biofilm former and non-former; Matrix, oral, rectal, nasal, urine and fecal; Region: northern region and central region; Hygiene, HP1, HP2, HP3.