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. 2018 Mar 24;34(16):2854–2855. doi: 10.1093/bioinformatics/bty184

Table 1.

Options for the parameters controlling scaling of population size and event time

size.scale ‘log’ Scale the population size logarithmically, with the base parameter log.base [default]
‘linear’ Scale population size linearly, with scale parameter linear.scale
‘topology’ Ignore population size and event times, output only the topological relationship
time.scale ‘4Ne’ Set time unit to 4Ne [default]
‘kyear’ Set time unit to 1000 years
‘generation’ Set time unit to generations
‘years’ Set time unit to years
‘log10year’ Scale time with function ‘log10(years before present)

Note: Further details can be found in the program documentation and the tutorial file.