Table 5. Significant marker-trait associations (MTAs) identified using MTMM.
| Trait Combination | Marker | P Value | |||||
|---|---|---|---|---|---|---|---|
| E1 | E2 | ||||||
| Full test | Common | Specific | Full test | Common | Specific | ||
| DF/DM | TP1071491 | 2.77E-04 | 5.07E-05 | - | 7.93E-04 | 1.77E-04 | - |
| TP1085280 | 1.62E-04 | 2.90E-05 | - | 9.81E-07 | 1.50E-07 | - | |
| TP1193783 | 1.44E-06 | 2.11E-07 | - | 1.35E-04 | 2.73E-05 | - | |
| TP1234781 | 6.47E-05 | 1.10E-05 | - | 2.67E-04 | 6.21E-05 | - | |
| TP12628 | 7.03E-05 | 1.20E-05 | - | 2.60E-06 | 3.89E-07 | - | |
| TP133182 | 3.60E-06 | 5.49E-07 | - | 7.58E-06 | 1.56E-06 | - | |
| DF/EW | TP1071491 | 3.66E-03 | 1.09E-03 | - | 5.63E-03 | 2.29E-03 | - |
| TP12628 | 8.33E-03 | - | 8.83E-03 | 1.36E-04 | - | 3.70E-05 | |
| TP963414 | 1.69E-03 | 4.02E-04 | - | 9.69E-03 | 2.79E-03 | - | |
| DF/FN | TP1193783 | 1.03E-03 | - | 5.88E-04 | 1.76E-03 | - | 0.000376 |
| TP12628 | 2.10E-03 | - | 6.79E-04 | 4.99E-05 | - | 1.05E-05 | |
| TP133182 | 4.59E-04 | - | 2.48E-04 | 3.23E-05 | - | 8.21E-06 | |
| TP1377207 | 2.49E-03 | - | 7.19E-04 | 3.23E-03 | - | 0.000791 | |
| TP1414942 | 1.01E-03 | - | 2.92E-04 | 7.10E-04 | - | 0.000171 | |
| DF/GY | TP103874 | 1.49E-05 | - | 2.51E-06 | 6.66E-04 | - | 0.000134 |
| TP1051370 | 9.45E-03 | - | 2.35E-03 | 2.38E-03 | - | 0.000556 | |
| TP1071491 | 4.47E-03 | - | 1.47E-03 | 3.77E-03 | - | 0.001256 | |
| TP1085280 | 2.31E-03 | - | 5.77E-04 | 1.87E-05 | - | 4.27E-06 | |
| TP1193783 | 4.26E-04 | - | 1.47E-04 | 4.45E-03 | - | 0.001029 | |
| TP1003465 | 5.86E-04 | 1.71E-04 | - | 1.51E-03 | 3.23E-04 | - | |
| DF/PL | TP1071491 | 3.90E-04 | - | 7.58E-05 | 5.58E-03 | - | 0.002296 |
| TP1084351 | 2.83E-04 | - | 6.08E-05 | 9.36E-03 | - | 0.002276 | |
| TP1084436 | 8.80E-04 | - | 1.80E-04 | 9.29E-03 | - | 0.002281 | |
| TP1267216 | 1.68E-03 | - | 5.38E-04 | 2.36E-03 | - | 0.000805 | |
| TP1298228 | 6.32E-03 | - | 1.81E-03 | 4.32E-03 | - | 0.000982 | |
| TP133182 | 1.27E-04 | - | 3.66E-05 | 4.52E-04 | - | 0.000523 | |
| TP1349783 | 7.40E-03 | - | 1.82E-03 | 1.79E-04 | - | 0.000356 | |
| TP1414942 | 1.80E-04 | - | 3.53E-05 | 2.12E-03 | - | 0.000749 | |
| DM/EW | TP12628 | 6.46E-03 | - | 8.06E-03 | 1.19E-04 | - | 3.92E-05 |
| TP1574043 | 5.02E-03 | 1.21E-03 | - | 2.07E-03 | 9.84E-03 | - | |
| TP1193783 | 6.85E-04 | 3.12E-03 | - | 2.90E-03 | 1.78E-03 | - | |
| DM/FN | TP1193783 | 2.49E-04 | - | 2.22E-04 | 9.43E-05 | - | 2.29E-05 |
| TP1234781 | 3.69E-03 | - | 2.14E-03 | 6.04E-04 | - | 0.000271 | |
| TP12628 | 1.62E-03 | - | 5.77E-04 | 4.38E-05 | - | 1.06E-05 | |
| TP133182 | 8.24E-04 | - | 4.28E-04 | 4.52E-04 | - | 0.000101 | |
| TP214730 | 6.56E-03 | - | 5.66E-03 | 2.06E-03 | - | 0.001095 | |
| TP531558 | 3.91E-03 | - | 6.33E-03 | 5.48E-03 | - | 0.003807 | |
| TP698175 | 6.54E-03 | - | 4.65E-03 | 6.63E-03 | - | 0.008532 | |
| TP701554 | 2.24E-03 | - | 1.31E-03 | 3.48E-03 | - | 0.004814 | |
| DM/GY | TP103874 | 9.12E-05 | - | 1.85E-05 | 4.30E-05 | - | 0.000219 |
| TP1003465 | 1.50E-03 | 7.67E-04 | - | 6.71E-03 | 2.54E-03 | - | |
| TP1084759 | 1.36E-03 | - | 1.73E-03 | 1.06E-03 | - | 0.001705 | |
| TP1085280 | 1.03E-03 | - | 2.88E-04 | 3.22E-03 | - | 1.04E-05 | |
| TP1193783 | 1.02E-04 | - | 4.94E-05 | 2.44E-04 | - | 7.87E-05 | |
| TP752454 | 1.98E-03 | - | 4.69E-04 | 1.58E-03 | - | 0.000443 | |
| TP760377 | 1.22E-03 | - | 3.64E-04 | 8.81E-03 | - | 0.00249 | |
| TP878687 | 2.89E-04 | - | 5.94E-05 | 2.96E-04 | - | 5.71E-05 | |
| TP962050 | 1.29E-03 | - | 3.18E-04 | 5.99E-03 | - | 0.002251 | |
| DM/PL | TP1084436 | 1.49E-03 | - | 3.20E-04 | 3.23E-03 | - | 0.00075 |
| TP1084759 | 1.28E-04 | - | 3.54E-05 | 6.45E-03 | - | 0.007011 | |
| TP1084844 | 7.23E-04 | - | 1.58E-04 | 9.46E-03 | - | 0.003965 | |
| TP1085280 | 6.84E-03 | - | 7.08E-03 | 9.32E-04 | - | 0.001128 | |
| TP122612 | 2.94E-03 | - | 6.66E-04 | 2.88E-03 | - | 0.001482 | |
| TP1234781 | 1.66E-06 | - | 3.00E-07 | 8.67E-04 | - | 0.000485 | |
| TP12628 | 8.20E-04 | - | 2.24E-04 | 1.41E-03 | - | 0.003374 | |
| TP133182 | 2.29E-04 | - | 6.53E-05 | 5.94E-03 | - | 0.004181 | |
| TP1355538 | 9.26E-03 | - | 2.49E-03 | 4.08E-03 | - | 0.00542 | |
| TP1414942 | 1.22E-04 | - | 2.48E-05 | 3.38E-04 | - | 0.000209 | |
| EL/LLF | TP1329979 | 4.32E-04 | 8.20E-05 | - | 2.55E-03 | 2.24E-03 | - |
| TP1513250 | 5.74E-03 | 1.31E-03 | - | 2.01E-03 | 7.85E-03 | - | |
| TP334661 | 4.50E-03 | 1.00E-03 | - | 8.90E-03 | 1.58E-03 | - | |
| TP351642 | 2.11E-03 | 4.41E-04 | - | 1.86E-04 | 2.18E-03 | - | |
| TP806011 | 4.81E-04 | 9.12E-05 | - | 4.96E-03 | 1.12E-03 | - | |
| TP808138 | 1.72E-03 | 3.57E-04 | - | 7.91E-03 | 1.97E-03 | - | |
| GY/PL | TP1298228 | 7.27E-03 | 5.23E-05 | - | 6.37E-03 | 9.47E-03 | - |
| TP1431319 | 7.44E-04 | 2.15E-03 | - | 9.55E-03 | 1.25E-03 | - | |
| TP150396 | 2.27E-04 | 1.48E-04 | - | 2.80E-03 | 4.34E-03 | - | |
| TP498100 | 7.08E-04 | 2.12E-04 | - | 1.86E-03 | 4.20E-04 | - | |
| TP878687 | 3.22E-03 | 1.84E-03 | - | 1.44E-03 | 4.06E-04 | - | |
| CT/FN | TP200121 | 6.19E-03 | 1.47E-03 | - | 9.18E-03 | 2.26E-03 | - |
Note: MTMM was performed for pairs of significantly correlated traits (p ≤ 0.05; r2 ≥ 0.2)