Table 1.
Sample ID | Tissue Genotype | NGS |
ddPCR-2 ml |
ddPCR-200 μl |
||
---|---|---|---|---|---|---|
AF (%) | AF (%) | Copies/ml | AF (%) | Copies/ml | ||
1 | p.Gly12Val | 19.08 | 22.80 | 4114.00 | 22.10 | 4620.00 |
2 | p.Gly12Ala | 37.93 | 40.40 | 15708.00 | 39.80 | 14300.00 |
3 | p.Gly13Asp | 5.51 | 12.00 | 607.20 | 12.20 | 715.00 |
4 | p.Gly13Asp | 19.32 | 27.20 | 1848.00 | 26.50 | 1969.00 |
5 | p.Gly12Val | 1.75 | 2.40 | 180.40 | 1.60 | 132.00 |
6 | p.Gly12Asp | 14.24 | 26.80 | 5104.00 | 25.80 | 5573.33 |
7 | p.Gly12Val | 39.70 | 60.50 | 12430.00 | 60.60 | 9460.00 |
8 | p.Gly12Ser | 1.99 | 6.00 | 280.50 | 7.90 | 357.50 |
9 | p.Gly13Asp | 7.84 | 16.80 | 1848.00 | 15.00 | 1826.00 |
10 | p.Gly12Ser | 0.00 | 0.70 | 30.80 | 0.00 | 0.00 |
11 | p.Gly12Asp | 0.00 | 1.13 | 112.20 | 0.00 | 0.00 |
12 | p.Gly13Asp | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
13 | p.Gly13Asp | 23.38 | 20.60 | 926.32 | 16.00 | 648.42 |
14 | p.Gly12Ala | 19.16 | 26.60 | 2917.89 | 25.60 | 2929.47 |
15 | p.Gly12Val | 31.11 | 44.10 | 7526.32 | 43.30 | 7410.53 |
16 | p.Gly12Val | 2.09 | 2.20 | 259.11 | 1.40 | 158.89 |
17 | p.Gly13Aspa | 7.55 | NA | NA | ||
18 | p.Gly12Asp | NA | 2.60 | 92.40 | 6.20 | 198.00 |
19 | p.Gly12Val | NA | 15.20 | 2002.00 | 13.20 | 1628.00 |
20 | p.Gly13Asp | 20.91 | 31.30 | 11088.00 | 30.40 | 11550.00 |
21 | p.Gly12Asp | 33.36 | 54.81 | 255200.00 | 54.40 | 242115.80 |
22 | p.Gly12Val | 32.27 | 36.80 | 35288.00 | 35.90 | 33770.00 |
23 | p.Gly12Asp | NA | 14.90 | 1650.00 | 13.10 | 1353.00 |
24 | p.Gly12Val | 3.56 | 8.30 | 682.00 | 7.80 | 759.00 |
25 | p.Gly12Val | 58.15 | 66.45 | 170720.00 | NA | |
26 | p.Gly12Ser | 0.00 | 0.00 | 0.00 | NA | |
p.Gly12Asp | 0.00 | 0.00 | 0.00 | NA | ||
p.Gly12Alab | 31.68 | 35.70 | 40304.00 | 35.60 | 39930.00 | |
27 | p.Gly13Asp | NA | 13.10 | 875.60 | 11.10 | 957.00 |
28 | p.Gly12Asp | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Abbreviations: AF, allele frequency; ctDNA, circulating tumor DNA; ddPCR, droplet digital PCR; NA, not available; NGS, next-generation sequencing.
This mutation was revealed as a c.38_39delGCinsAT and not the expected c.38G>A by NGS. The mutation was not investigated by ddPCR.
The p.GlyAla was not detected by the tissue genotyping, but exclusively in the ctDNA analysis.