Table 2. Assembly characteristics for mapping based assembly.
The quality, coverage and percentage nucleotide identity of the assembled DENV3 genome using different back bones and sequences for mapping using MIRA assembler are shown.
| Criteria | Backbone | av.qual | #-reads | mx.cov. | av.cov | GC% | CnNoCov |
|---|---|---|---|---|---|---|---|
| All Reads from F2 against all
4 Refseq of dengue viruses |
DENV3 | 41 | 2009 | 96 | 26.27 | 46.67 | 145 |
| DENV1 | 30 | 2 | 3 | 1.01 | 46.67 | 10587 | |
| DENV2 | 30 | 1 | 1 | 1 | 45.82 | 10723 | |
| DENV4 | 30 | 1 | 1 | 1 | 47.12 | 10649 | |
| “virus reads” from F2 against all
4 Refseq of dengue viruses |
DENV3 | 42 | 18180 | 788 | 231.53 | 46.66 | 104 |
| DENV1 | 30 | 3 | 4 | 1.02 | 46.67 | 10587 | |
| DENV2 | 30 | 1 | 1 | 1 | 45.82 | 10723 | |
| DENV4 | 30 | 1 | 1 | 1 | 47.12 | 10649 | |
| “virus reads” from F2 against
DENV3 and an Indian strain |
DENV3 (RefSeq) | 42 | 18178 | 793 | 231.51 | 46.66 | 104 |
| AY770511.2 | 43 | 18696 | 792 | 236.58 | 46.65 | 104 |
Table shows the quality, coverage and percentage nucleotide identity of the assembled DENV3 genome using different back bones and sequences for mapping using MIRA assembler. Backbone, reference genome used for assembly; av.qual, average quality of assembly; mx.cov, maximum coverage of assembled genome by reads; av.cov, average coverage of assembled genome by reads; No cov, number of nucleotides of reference not covered in assembly; DENV3, dengue virus type 3.