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. 2018 Aug 9;19:601. doi: 10.1186/s12864-018-4976-3

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — NGS-based neighbour-joining tree of 164 E. coli isolates based on an ad-hoc cgMLST including 2547 alleles. The tree was built with SeqSphere+ and visualized by iTOL v.3. Different MLST clusters are highlighted with dark/light grey shadows. The color-coded rings represent the origins of the samples (inner ring) and the corresponding replicon types to the present bla_CMY-2 carrying plasmids (outer rings)