Table 4.

Statistical summary for runs of homozygosity in sub-populations of three chicken breeds

		9 sub-populations
		BEC07	BEC10	BEC15	BYC07	BYC10	BYC15	LSC10	LSC12	LSC15
NSEG	Mean	283.3	276.9	359.93	434.93	365.03	535.2	302.73	286.2	336.37
	SD	29.79	37.14	76.71	68.13	41.16	74.15	47.20	38.37	51.53
	Min	198	203	233	262	285	362	245	208	238
	Max	331	374	528	555	459	710	441	385	426
KB	Mean	52,140.53	50,711.57	66,627.02	81,603.17	67,418.29	101,698.6	55,047.78	52,951.72	60,852.49
	SD	5327.89	6584.63	13,848.81	12,991.6	6958.4	14,048.53	8217.47	6859.34	9254.44
	Min	37,171.4	39,317.8	41,702.3	54,620.9	53,692.6	68,533.3	44,327.9	37,776.7	44,822.8
	Max	60,167.8	66,008.9	95,603.7	106,793	81,961.5	132,443	76,486.6	69,474.1	81,567.4
KBAVER	Mean	184.18	183.38	185.28	187.74	185	190.09	182.13	185.25	181.11
	SD	5.69	6.96	6.34	6.41	7.22	5.27	8.16	6.86	6.02
	Min	170.96	168.3	173.63	176.13	171.58	180.77	168.16	173.05	171.62
	Max	193.67	199.3	195.99	208.48	196.58	199.42	203.06	200.85	191.57
NSNP	Mean	87.92	88.78	91.13	93.25	89.96	96.28	87.76	86.45	88.98
	SD	32.75	33.13	34.27	37.12	34.76	38.44	32.35	31.1	32.6
	Min	50	50	50	50	50	50	50	50	50
	Max	368	339	332	383	370	419	392	310	343
Density	Mean	2.28	2.23	2.24	2.2	2.24	2.18	2.25	2.31	2.21
	SD	1.87	1.76	1.91	1.67	1.82	1.75	1.7	1.76	1.65
	Min	0.53	0.55	0.57	0.55	0.54	0.58	0.59	0.63	0.55
	Max	27.84	27.84	28.3	23.57	35.56	33.83	22.77	19.37	35.71
PHOM	Mean	0.99	0.99	0.99	0.995	0.99	0.995	0.99	0.99	0.99
	SD	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01

NSEG average number of segments for the individual declared homozygous

KB average of total number of kb contained within homozygous segments

KB_AVER average size of homozygous segments

NSNP average number of SNPs in run

Density max inverse density (kb/SNP)

PHOM Proportion of sites homozygous

Min Minimum

Max Maximum

SD Standard deviation