Table 1.
Primer | Sequence | Number of cycles | Denaturing temperature (°C) | Product size (bp) |
---|---|---|---|---|
UT‐A F5 | 5′ – GTGGCTTCTGTTTCCTGTGACCTT – 3′ | 35 | 60 | UT‐A1/3 |
UT‐A R10 | 5′ – CCTCGGGGTAGGTGACTTTGCTGAGT – 3′ | 35 | 60 | F5/R10 = 682 |
UT‐A F23 | 5′ – CTGTTCATATCCTCACCTCTCATTTG – 3′ | 35 | 60 | UT‐A1/2 |
UT‐A R25 | 5′ – CACAGATAACATGTTAGCCAGGGC – 3′ | 35 | 60 | F23/R25 = 252 |
UT‐B F1 | 5′ – GCCAGGAAGCCAGCTAGAGTGGTC – 3′ | 35 | 60 | UT‐B1 or UT‐B2 |
UT‐B R5 | 5′– CTGTCCTGGCTGAGCAAGAGG – 3′ | 35 | 60 | F1/R5 = 450 or 600 |
UT‐B F4 | 5′ – CATCTTGCCAACCAGCTTAAAG – 3′ | 35 | 60 | UT‐B |
UT‐B F6 | 5′ – GGTGGGAGTACTCATGGCTGTCTTTTC – 3′ | 35 | 60 | F4/R5 = 219 |
UT‐B R6 | 5′ – GTAACAGCCACCAGAAATAGTC – 3′ | 35 | 60 | F4/R6 = 320 |
UT‐B R10 | 5′ ‐ GCCATAAAGTTTGCCATGCCG ‐ 3′ | 35 | 60 |
F4/R10 = 870 F6/R10 = 609 |
Actin_F | 5′ – GTGCTGTCTGGCACCACCAT – 3′ | 30 | 55 | Actin |
Actin_R | 5′ – CCTGTAACAACGCATCTCATAT – 3′ | 30 | 55 | 514 |
KEY: F = forward primer; R = reverse primer; “F5” = forward primer targeted to exon 5 etc.