TABLE 1.
Replicon | Gene no. | Gene name | Genomic region/strand deleted regione | Gene length (bp) | Avg coverage (×)f |
---|---|---|---|---|---|
Chr | HVO_0001d (ori1)a | orc1d | 258–1952/F | 1,695 | ND |
282–1925 | |||||
Chr | HVO_0194a | orc9 | 174892–176016/F | 1,125 | 1,116 |
174909–176000 | |||||
Chr | HVO_0634d (ori3)a | orc2d | 569203–570429/R | 1,227 | 252 |
569215–570384 | |||||
Chr | HVO_1537a | orc15 | 1403626–1404828/R | 1,203 | 40 |
1403674–1404810 | |||||
Chr | HVO_1725d (ori2)a | orc5d | 1594707–1595912/F | 1206 | 50 |
1594719–1595900 | |||||
Chr | HVO_2042a | orc4 | 1888354–1889583/F | 1,230 | 102 |
1888369–1889568 | |||||
Chr | HVO_2133a | orc16 | 1998477–1999643/R | 1,167 | 10 |
1998492–1999634 | |||||
Chr | HVO_2292a | orc14 | 2160851–2161873/R | 1,023 | ND |
2160870–2161857 | |||||
Chr | HVO_2293b | orc11 | 2162076–2162873/F | 798 | ND |
pHV4 | HVO_A0001d (ori-pHV4)a | orc3d | 152–1402/F | 1,251 | 62 |
167–1387 | |||||
pHV4 | HVO_A0064c | orc13 | 55398–56897/R | 1,500 | 55 |
pHV4 | HVO_A0072b | orc12 | 65261–66289/R | 1,029 | ND |
pHV4 | HVO_A0257a | orc7 | 257391–258668/R | 1,278 | 171 |
257415–258656 | |||||
pHV3 | HVO_B0001d (ori-pHV3)b | orc6d | 201–1433/F | 1,233 | ND |
222–1409 | |||||
pHV1 | HVO_C0001d (ori-pHV1)a | orc10d | 101–1327/F | 1,227 | ND |
143–1288 | |||||
pHV1 | HVO_C0057a | orc8 | 56369–57616/F | 1,248 | 618 |
56375–57604 |
Deleted.
Essential.
Pop-in not possible; genome rearrangement occurred.
Part of origin of replication.
F, forward; R, reverse.
ND, nondetectable.