Table 1.
List of genes in DT-QTL (RM447 and RM3480) co-expressed with other genes in rice under abiotic stress condition (PCC 0.85).
| QTL location | Locus ID | RGAP Ver 6 Annotation | GO name (GO level) | No. of genes in module | |
|---|---|---|---|---|---|
| Positive correlation | Negative correlation | ||||
| RM447 | Os08g41810 | Ribosomal protein L22 | Translation (5,6) | 7 | – |
| Os08g41830 | Sulfite oxidase | Oxidation reduction (3) | 4 | – | |
| Os08g41990 | Aminotransferase | Porphyrin biosynthetic process (6), chlorophyll biosynthetic process (5), tetrapyrrole biosynthetic process (5) | 168 | 1 | |
| Os08g42030 | Peroxidase precursor | Response to oxidative stress (4) | 15 | 12 | |
| Os08g42040 | LTPL80 - Protease inhibitor/seed storage/LTP family protein precursor | Lipid transport (5) | 10 | – | |
| Os08g42080 | ACR5 | Metabolic process (2) | 3 | 1 | |
| Os08g42100 | ACT domain containing protein | Metabolic process (2) | 15 | 1 | |
| Os08g42290 | expressed protein | No GO terms found | 1 | – | |
| Os08g42310 | Expressed protein | No GO terms found | 2 | – | |
| Os08g42320 | Expressed protein | No GO terms found | 4 | – | |
| Os08g42380 | Mitochondrial import inner membrane translocase subunit Tim | Protein targeting to mitochondrion (6,7), protein import into mitochondrial inner membrane (7,9) | 32 | – | |
| Os08g42400 | No apical meristem protein | Regulation of transcription (–) | 36 | 9 | |
| RM3480 | Os08g43060 | Expressed protein | Carboxylic acid metabolic process (6) | 5 | – |
| Os08g43130 | NAP1 | No GO terms found | 20 | – | |
| Os08g43230 | TraB family protein | No GO terms found | 128 | – | |
| Os08g43350 | NC domain-containing protein | No GO terms found | 37 | ||
| Os08g43370 | 6-phosphogluconolactonase | Pentose-phosphate shunt (5) | 1 | – | |
| Os08g43440 | Cytochrome P450 | Oxidation reduction (3) | 91 | 1 | |
| Os08g43560 | OsAPx4 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8,9 | Response to oxidative stress (4), hydrogen peroxide catabolic process (6) | 5 | 2 | |
| Os08g43580 | Acyl carrier protein | Fatty acid biosynthetic process (6), lipid biosynthetic process (4) | 6 | – | |
| Os08g43640 | 26S proteasome non-ATPase regulatory subunit 3 | Regulation of protein catabolic process (6) | 4 | – | |
| Os08g43680 | Glutathione S-transferase, C-terminal domain containing protein | No GO terms found | 4 | – | |
| Os08g43730 | DUF630/DUF632 domains containing protein | No GO terms found | 1 | – | |