Experimental Models
|
MCF10A pBabePuro (Homo sapiens) |
Zev Gartner Lab |
n/a |
MCF10CA1d.cl1 (H. sapiens) |
Barbara Ann Karmanos Cancer Institute |
n/a |
Antibodies
|
CENP‐E (1:400, mouse monoclonal, clone 1H12) |
Abnova |
MAB1924 |
BubR1 (1:600, mouse monoclonal, clone 8G1) |
Thermo Fisher |
MA5‐16036 |
beta‐Tubulin (1:5,000, mouse monoclonal, clone TUB 2.1) |
Abcam |
ab11309 |
CDC20 (1:400, rabbit polyclonal) |
Bethyl |
A301‐179A |
gamma‐Tubulin (1:12,000, rabbit polyclonal) |
Abcam |
ab176404 |
LC3A (1:400, rabbit polyclonal) |
Novus |
NB100‐2331 |
Survivin (1:1,000, rabbit monoclonal, clone EP2880Y) |
Abcam |
ab176402 |
INCENP (1:1,000, mouse monoclonal, clone 3D2) |
Thermo Fisher |
MA5‐17100 |
Aurora A (1:6,000, rabbit monoclonal, clone EPR5026) |
Abcam |
ab176375 |
CENP‐A (1:500, rabbit polyclonal) |
Abnova |
PAB18324 |
HMGB1 (1:3,000, rabbit monoclonal, clone EPR3507) |
Abcam |
ab176398 |
γ‐H2AX (1:2,500, rabbit monoclonal, clone 20E3) |
Cell Signaling |
9718BF |
Chemicals, enzymes and other reagents
|
Matrigel
|
Matrigel, growth factor reduced, phenol red‐free |
Corning |
356231 |
Antibody conjugation |
DyLight 550 Microscale labeling kit |
Thermo Fisher |
84531 |
DyLight 650 Microscale labeling kit |
Thermo Fisher |
84536 |
Medium
|
DMEM/F12, no phenol red |
Gibco |
21041‐33 |
Horse Serum |
Gibco |
16050‐122 |
EGF |
Sigma |
E9644‐.2MG |
Hydrocortisone |
Sigma |
H0888‐1g |
Cholera Toxin |
Sigma |
C8052‐1MG |
Insulin |
Life Technologies |
12585014 |
Drugs
|
Barasertib (1.11 nM) |
SelleckChem |
S1147 |
CHR‐6494 (500 nM) |
MedChem Express |
HY‐15217 |
CW069 (25.0 μM) |
SelleckChem |
S7336 |
Etoposide (333 nM) |
SelleckChem |
S1225 |
GSK461364 (2.20 nM) |
SelleckChem |
S2193 |
GSK923295 (3.20 nM) |
SelleckChem |
S7090 |
Ispinesib (1.70 nM) |
SelleckChem |
S1452 |
MK‐5108 (0.576 nM) |
SelleckChem |
S2770 |
MK‐8776 (9.00 nM) |
SelleckChem |
S2735 |
Paclitaxel (2.67 nM) |
SelleckChem |
S1150 |
Vinblastine (2.40 nM) |
Sigma |
V1377 |
YM155 (0.540 nM) |
SelleckChem |
S1130 |
Software
|
R |
https://r-project.org
|
3.3.3 |
Knime |
https://www.knime.com
|
3.2.1 |
Python |
https://python.org
|
3.4 |
Zeiss Zen blue |
http://zeiss.com
|
2012 |
Zeiss Zen black |
http://zeiss.com
|
2012 |
LabView |
http://ni.com
|
2013 SP1 |
Fiji/ImageJ |
https://fiji.sc
|
fiji‐latest, timestamp 20160902160412 |
MATLAB |
https://www.mathworks.com/
|
2015a |
IPA |
https://www.qiagenbioinformatics.com/products/ingenuity-pathway-analysis/
|
|
Other
|
Axio Observer.Z1 |
Carl Zeiss Microscopy |
431007 9901 000 |
Scan Module LSM 710 Base Unit |
Carl Zeiss Microscopy |
000000 1410 052 |
Spectral Detection Unit LSM 780 + 2 PMT |
Carl Zeiss Microscopy |
000000 1670 619 |
Objective Plan‐Apochromat 20×/0.8 M27 |
Carl Zeiss Microscopy |
420650 9901 000 |
Laser diode 405 nm CW 30 mW |
Carl Zeiss Microscopy |
000000 1410 119 |
Laser 561 nm |
Carl Zeiss Microscopy |
000000 1410 117 |
Master Beam Splitter Wheel for Laser 633, 561, 514, 488, 458 nm |
Carl Zeiss Microscopy |
000000 1583 982 |
Beam path NLO+405/445 Axio Observer/Axio Imager |
Carl Zeiss Microscopy |
000000 1741 731 |
Spinning Disc Unit CSU‐X1A 5000 |
Carl Zeiss Microscopy |
423638 9090 000 |
Spinning Disc Laser Unit 405 nm |
Carl Zeiss Microscopy |
000000 1514 464 |
Rolera EM‐C2 Bio‐Imaging Microscopy Camera, Mono, 14‐bit |
Carl Zeiss Microscopy |
000000 1915 668 |
PROcellcare 5030 + Peristaltic Pump Extension Unit |
PROdesign |
n/a |
Energenie EG‐PM2 |
Energenie |
EG‐PM2 |
4× LabTek holder |
EMBLEM |
LTT‐01 and LTT‐02 |