Table 2. Technical and biological factors associated with the microbial structure of shrimp microbiota.
The impact was measured using Anosim (R value) and PERMANOVA with the adonis function (F and R2 values) of Unweighted UniFrac distances. For each analysis we performed 1,000 permutations to obtain the p value.
| Unweighted UniFrac | |||||||
|---|---|---|---|---|---|---|---|
| Parameter | ANOSIM | PERMANOVA | |||||
| R | P value | pseudo-F | P value | R2 | P value | ||
| Technical factors | Paper | 0.970 | 0.001 | 19.866 | 0.001 | 0.667 | 0.001 |
| Primer | 0.663 | 0.001 | 12.346 | 0.001 | 0.459 | 0.001 | |
| Hypervariable region | 0.659 | 0.001 | 14.482 | 0.001 | 0.410 | 0.001 | |
| Country | 0.522 | 0.001 | 10.753 | 0.001 | 0.341 | 0.001 | |
| Sequencer | 0.493 | 0.001 | 16.097 | 0.001 | 0.231 | 0.001 | |
| Biological factors | Lifestyle | 0.333 | 0.001 | 8.630 | 0.001 | 0.139 | 0.001 |
| Organ | 0.261 | 0.001 | 6.998 | 0.001 | 0.252 | 0.001 | |
| Developmental stage | 0.215 | 0.001 | 5.075 | 0.001 | 0.126 | 0.001 | |