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. 2018 Aug 10;6:e5382. doi: 10.7717/peerj.5382

Table 2. Technical and biological factors associated with the microbial structure of shrimp microbiota.

The impact was measured using Anosim (R value) and PERMANOVA with the adonis function (F and R2 values) of Unweighted UniFrac distances. For each analysis we performed 1,000 permutations to obtain the p value.

Unweighted UniFrac
Parameter ANOSIM PERMANOVA
R P value pseudo-F P value R2 P value
Technical factors Paper 0.970 0.001 19.866 0.001 0.667 0.001
Primer 0.663 0.001 12.346 0.001 0.459 0.001
Hypervariable region 0.659 0.001 14.482 0.001 0.410 0.001
Country 0.522 0.001 10.753 0.001 0.341 0.001
Sequencer 0.493 0.001 16.097 0.001 0.231 0.001
Biological factors Lifestyle 0.333 0.001 8.630 0.001 0.139 0.001
Organ 0.261 0.001 6.998 0.001 0.252 0.001
Developmental stage 0.215 0.001 5.075 0.001 0.126 0.001