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. Author manuscript; available in PMC: 2018 Aug 15.
Published in final edited form as: Cell Rep. 2018 Jul 10;24(2):379–390.e6. doi: 10.1016/j.celrep.2018.06.054

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
CD28 antibody Thermo Fisher Scientific Cat # 16-0289-85; RRID: AB_468927
PI3 Kinase p85 antibody Cell Signaling Technology Cat # 4292; RRID: AB_329869
Alexa Fluor 647 CD3ε antibody BioLegend Cat # 317312; RRID: AB_571883
Pacific Blue PD-1 antibody BioLegend Cat # 329915; RRID: AB_1877194
PE/Cy7 PD-L1 antibody BioLegend Cat # 329717; RRID: AB_2561686
ZAP70 pY493 antibody Cell Signaling Technology Cat # 2704S; RRID: AB_2217457
PE mouse PD-1 antibody BioLegend Cat # 109103; RRID: AB_313420
APC mouse PD-1 antibody BioLegend Cat # 109111; RRID: AB_10613470
PE mouse PD-L1 antibody BioLegend Cat # 124307; RRID: AB_2073557
PE mouse isotype antibody BioLegend Cat # 400607; RRID: N/A
APC mouse isotype antibody BioLegend Cat # 400611; RRID: N/A
Pacific Blue PD-1 antibody BioLegend Cat # 329915; RRID: AB_1877194
PE-Cy7 PD-L1 antibody BioLegend Cat # 329717; RRID: AB_2561686
Pacific Blue isotype antibody BioLegend Cat # 400151; RRID: N/A
PE-Cy7 isotype antibody BioLegend Cat # 400302; RRID: N/A
TruStain FcX BioLegend Cat # 422301; RRID: N/A
PE PD-1 antibody Thermo Fisher Scientific Cat # 12-9969-41; RRID: AB_10733013
PE PD-L1 antibody Thermo Fisher Scientific Cat # 12-5983-41; RRID: AB_11042721
BV421 CD45 antibody BioLegend Cat # 368521; RRID: AB_2687374
Alexa700 CD11b antibody BioLegend Cat # 101222; RRID: AB_493705
PE/Cy5 CD11c antibody BioLegend Cat # 301609; RRID: AB_493579
Alexa488 CD3 antibody BioLegend Cat # 300319; RRID: AB_493690
PE PD-L1 antibody BioLegend Cat # 329705; RRID: AB_940366
APC PD-1 antibody BioLegend Cat # 329907; RRID: AB_940473
PE isotype antibody BioLegend Cat # 400313; RRID: N/A
APC isotype antibody BioLegend Cat # 400119; RRID: N/A
AF647 mouse TCRβ antibody BioLegend Cat # 109217; RRID: AB_493347
Mouse PD-1 blockade antibody (J43) Thermo Fisher Scientific Cat # 16-9985-82; RRID: AB_469307
Isotype antibody for J43 Thermo Fisher Scientific Cat # 16-4888-81; RRID: AB_470171
Human PD-1 blockade antibody (Pembrolizumab) BioVison Inc Cat # A1306; RRID: N/A
Isotype antibody for Pembrolizumab BioLegend Cat # 403701; RRID: N/A
Chemicals, Peptides, and Recombinant Proteins
1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) Avanti Polar Lipids Cat # 850457C
1,2-dioleoyl-sn-glycero-3-[(N-(5-amino-1-carboxypentyl) iminodiacetic acid) succinyl] (nickel salt, DGS-NTA-Ni) Avanti Polar Lipids Cat # 790404C
1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N- (lissamine Rhodamine B sulfonyl) (ammonium salt, Rhodamine-PE) Avanti Polar Lipids Cat # 810158C
N-(4,4-Difluoro-5,7-Dimethyl-4-Bora-3a,4a-Diaza-s-Indacene-3-Propionyl)-1,2-Dihexadecanoyl-sn-Glycero-3-Phosphoethanolamine (Triethylammonium Salt, BODIPY-PE) Thermo Fisher Scientific Cat # D3800
Poly-D-Lysine Sigma-Aldrich Cat # P6407
CLIP-Surface 547 New England Biolabs Cat # S9233S
SNAP-Surface Alexa Fluor 647 New England Biolabs Cat # S9136S
SNAP-Cell 505-Star New England Biolabs Cat # S9103S
SNAP-Cell TMR-Star New England Biolabs Cat # S9105S
SNAP-Cell 647-SiR New England Biolabs Cat # S9102S
SEE super antigen Toxin Technology Cat # ET404
Strep-SNAP-PD-1EX-His10 This study N/A
Strep-SNAP-PD-1EX This study N/A
Strep-SNAP-PD-1(K78A)EX -His10 This study N/A
Strep-SNAP-PD-L1EX-His10 This study N/A
Strep-SNAP-PD-L2EX-His10 This study N/A
Strep-SNAP-B7.2EX-His10 This study N/A
Mouse MHC-I H2Kb Enfu Hui N/A
Mouse PD-1EX-His Sino Biological Cat # 50124-m08h
Mouse PD-L1EX-His Sino Biological Cat # 50010-m08h
Mouse B7.2EX-His Sino Biological Cat # 50068-m08h
Mouse ICAMEX-His Sino Biological Cat # 50440-m08h
SIINFEKL peptide Anaspec Cat # AS-60193-1
Live/Dead Aqua Thermo Fisher Scientific Cat # L34966
Critical Commercial Assays
Human IL-2 ELISA MAX Deluxe BioLegend Cat # 431804
CytoTox 96 Non-Radioactive Cytotoxicity Assay kit Promega Cat # G1780
Cell Line Nucleofector Kit L LONZA Cat # VACA-1005
Quantum R-PE MESF Bangs Laboratories Inc Cat # 827
Quantum APC MESF Bangs Laboratories Inc Cat # 823
Experimental Models: Cell Lines
HEK293T Ronald Vale N/A
Jurkat E6.1 T cells Arthur Weiss N/A
Raji B cells Ronald Vale N/A
HEK293F Andrew Ward N/A
Jurkat T cells with PD-1-mGFP Enfu Hui N/A
Raji B cells with PD-L1-mCherry Enfu Hui N/A
OT-I Ananda Goldrath N/A
EL4 Ira Mellman N/A
Oligonucleotides
See Table S2 for the list of Oligos N/A N/A
Recombinant DNA
See Table S3 for the list of recombinant DNA N/A N/A
Software and Algorithms
ImageJ NIH https://imagej.nih.gov/ij/
Micro-Manager Open Imaging https://micro-manager.org/
AccPbFRET (Roszik et al., 2008) http://biophys.med.unideb.hu/accpbfret/
GraphPad Prism 5 GraphPad Software https://www.graphpad.com/scientific-software/prism/
FlowJo FlowJo, LLC https://www.flowjo.com/