TABLE 2 .
Sense transcripts encoding DNA metabolism-related gene products
| Gene ID no. | Putative function | Protein domain (E value)a | Correlation with ancRNAb |
|---|---|---|---|
| FGRRES_00667 | Similar to chromatin assembly complex subunit p60 | Pfam12894 (3.69e−08) | 0.76 (lncRNA-026) |
| FGRRES_00736 | Similar to DNA damage response protein WSS1 | Pfam08325 (3.75e−79) | 0.89 (lncRNA-030) |
| FGRRES_01336 | Origin recognition complex subunit 1 | Cd04720 (3.48e−37) | 0.69 (lncRNA-065) |
| FGRRES_01614 | Similar to DNA mismatch repair protein MLH3 | COG0323 (5.15e−39) | 0.88 (lncRNA-083) |
| FGRRES_05344 | Histone regulatory protein 1 (HIR1) | Pfam07569 (6.27e−99) | 0.29 (lncRNA-324) |
| FGRRES_05737 | ssDNA/RNA-binding protein | Pfam00076 (1.73e−15) | 0.91 (lncRNA-342) |
| FGRRES_05781 | Similar to TCB2 transposase | Pfam01498 (3.32e−08) | 0.97 (lncRNA-344) |
| FGRRES_06122 | Origin recognition complex subunit 2 | Pfam04084 (3.98e−163) | 0.39 (lncRNA-356) |
| FGRRES_06231 | Origin recognition complex subunit 4 | Pfam14629 (1.82e−70) | 0.01 (lncRNA-367) |
| FGRRES_06286 | Similar to DNA repair polymerase RAD30 | Cd01703 (6.27e−145) | 0.75 (lncRNA-369) |
| FGRRES_06339 | DNA primase small subunit | Pfam01896 (8.59e−42) | 0.40 (lncRNA-373) |
| FGRRES_07280 | Similar to DNA repair helicase ERCC3/RAD25 | Pfam16203 (6.04e−173) | 0.70 (lncRNA-461) |
| FGRRES_08650 | Similar to SEN1 helicase | Pfam12726 (0e+00) | 0.66 (lncRNA-214) |
| FGRRES_08658 | Similar to DNA repair endonuclease ERCC4/RAD16 | Pfam02732 (2.80e−25) | 0.77 (lncRNA-216) |
| FGRRES_09872 | Similar to DNA repair dioxygenase AlkB | COG3145 (4.37e−07) | −0.02 (lncRNA-144) |
| FGRRES_16954 | Centromere protein T (CENP-T) | Pfam15511 (6.41e−47) | −0.36 (lncRNA-235) |
| FGRRES_17018 | Nonstructural maintenance of chromosome element 4 (NSE4) | Pfam08743 (3.83e−45) | 0.10 (lncRNA-201) |
a
BLAST search for associated protein domains related to DNA metabolic processes.
b
Pearson’s correlation for the expression levels of sense transcripts and ancRNAs across the sexual development stages. Values greater than 0.7 are marked in boldface.