Table 2.
Phenotypic variance explained by SNP windows for the change in TR during heat stress prior to puberty (prepubertal ΔTR)
| SSCa | Position start (bp)b | Position end (bp)c | Variance explained (%)d | Candidate gene(s)e |
|---|---|---|---|---|
| 5 | 69383487 | 69487000 | 0.049 | TSPAN9, TEAD4 |
| 5 | 72245513 | 72424166 | 0.043 | MICAL3, LOC102162673 |
| 5 | 69487000 | 69597659 | 0.041 | TULP3, LOC102162709, ITFG2, LOC102164154 |
| 14 | 136702381 | 136891524 | 0.040 | ATRNL1, LOC102161079 |
| 14 | 13443000 | 13564731 | 0.040 | FZD3 |
| 5 | 69437477 | 69555670 | 0.039 | TEAD4, TULP3, LOC102162709 |
| 14 | 39275817 | 39773984 | 0.038 | — |
| 5 | 69333042 | 69437477 | 0.038 | TSPAN9, TEAD4 |
| 5 | 72352991 | 72500090 | 0.037 | LOC102162673 |
| 14 | 139721921 | 139813511 | 0.037 | — |
| 5 | 72141748 | 72352991 | 0.036 | BID, MICAL3 |
| 5 | 69555670 | 69691307 | 0.035 | LOC102162709, ITFG2, LOC10216415, LOC102164154, LOC106510369, LOC100512907 |
| 14 | 13564731 | 13666604 | 0.035 | LOC102157783, EXTL3 |
| 14 | 136824061 | 136939847 | 0.035 | ATRNL1 |
| 14 | 13356571 | 13497286 | 0.034 | FBXO16, FZD3 |
| 18 | 27560376 | 27761494 | 0.033 | ING3, TSPAN12 |
| 14 | 39616077 | 39904195 | 0.033 | LOC102157597 |
| 14 | 13497286 | 13621432 | 0.033 | FZD3 |
| 1 | 283482216 | 283609728 | 0.032 | SUSD1 |
| 7 | 111019262 | 111170076 | 0.032 | |
| 14 | 136939847 | 137099653 | 0.032 | ATRNL1 |
| 5 | 70488420 | 70775116 | 0.032 | ERC1, RAD52 |
| 13 | 215584218 | 215697149 | 0.031 | C2CD2, LOC102161849 |
| 5 | 69597659 | 69759629 | 0.031 | LOC102164154, LOC106510369, LOC100512907, IQSEC3 |
Gene abbreviations: TSPAN9 = tetraspanin 9; TEAD4 = TEA domain transcription factor 4; MICAL3 = microtubule associated monooxygenase, calponin and LIM domain containing 3; ITFG2 = integrin alpha FG-GAP repeat containing 2; EXTL3 = exostosin like glycosyltransferase 3; ATRNL1 = attractin-like 1; FBXO16 = F-box protein 16; FZD3 = frizzled class receptor 3; ING3 = inhibitor of growth family member 3; TSPAN12 = tetraspanin 12; SUSD1 = sushi domain containing 1; ERC1 = ELKS/RAB6-interacting/CAST family member 1; RAD52 = RAD52 homolog, DNA repair protein; C2CD2 = C2 calcium dependent domain containing 2; IQSEC3 = IQ motif and Sec7 domain 3.
aChromosome number of the pig genome for which the SNP window location is mapped.
bSNP window positions start location on the chromosome.
cSNP window position end location on the chromosome.
dPercentage of variance explained by five SNP windows.
eGenes located within the SNP window.