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. 2018 Apr 16;96(6):2074–2085. doi: 10.1093/jas/sky131

Table 3.

Phenotypic variance explained by SNP windows for the change in TR during the heat stress challenge following puberty (postpubertal ΔTR)

SSCa Position start (bp)b Position end (bp)c Variance explained (%)d Candidate gene(s)e
18 45115484 45291167 0.116 DST
15 65866223 66790298 0.104 FMNL2, GPR17, LIMS2
15 65585973 66442766 0.096 UGGT1, GPR17, LIMS2
16 45509140 45700636 0.091
6 20211611 20449928 0.086 LOC102165723
6 110474964 110566591 0.085
18 45058469 45173869 0.084
15 66442766 66907405 0.083 GPR17, LIMS2, FMNL2
6 108129231 108545750 0.083 TTR, LOC106510687, RNF125
6 109474291 109870440 0.083 ASXL3
6 108138639 108646700 0.081 LOC106510687, RNF125
18 20063484 20338092 0.081 LOC100516838, LOC100737195, STRIP2, AHCYL2
6 115147146 115788549 0.081
16 37793490 38004706 0.081
6 107975607 108138639 0.080
16 48647762 48792525 0.079 LOC106504115, MAST4
4 13581654 13825367 0.077 LOC102164882
16 47786015 47968058 0.077 ERBB2IP, LOC102167060
15 65327301 65866223 0.074 UGGT1
2 46429654 46587388 0.074
7 34708292 34803564 0.072
2 159763907 159898148 0.071
1 16981336 17160649 0.071 CCDC170
2 51076948 51244889 0.070

Gene abbreviations: DST = dystonin; FMNL2 = formin like 2; GPR17 = G protein-coupled receptor 17; LIMS2 = LIM zinc finger domain containing 2; TTR = transthyretin; ASXL3 = additional sex combs like 3; STRIP2 = striatin interacting protein 2; AHCYL2 = adenosylhomocysteinase like 2; MAST4 = microtubule associated serine/threonine kinase family member 4; ERBB2IP = erbb2 interacting protein; UGGT1 = UDP-glucose glycoprotein glucosyltransferase 1; CCDC170 = coiled-coil domain containing 170.

aChromosome number of the pig genome for which the SNP window location is mapped.

bSNP window positions start location on the chromosome.

cSNP window position end location on the chromosome.

dPercentage of variance explained by five SNP windows.

eGenes located within the SNP window.