Table 3.
Phenotypic variance explained by SNP windows for the change in TR during the heat stress challenge following puberty (postpubertal ΔTR)
| SSCa | Position start (bp)b | Position end (bp)c | Variance explained (%)d | Candidate gene(s)e | 
|---|---|---|---|---|
| 18 | 45115484 | 45291167 | 0.116 | DST | 
| 15 | 65866223 | 66790298 | 0.104 | FMNL2, GPR17, LIMS2 | 
| 15 | 65585973 | 66442766 | 0.096 | UGGT1, GPR17, LIMS2 | 
| 16 | 45509140 | 45700636 | 0.091 | — | 
| 6 | 20211611 | 20449928 | 0.086 | LOC102165723 | 
| 6 | 110474964 | 110566591 | 0.085 | — | 
| 18 | 45058469 | 45173869 | 0.084 | — | 
| 15 | 66442766 | 66907405 | 0.083 | GPR17, LIMS2, FMNL2 | 
| 6 | 108129231 | 108545750 | 0.083 | TTR, LOC106510687, RNF125 | 
| 6 | 109474291 | 109870440 | 0.083 | ASXL3 | 
| 6 | 108138639 | 108646700 | 0.081 | LOC106510687, RNF125 | 
| 18 | 20063484 | 20338092 | 0.081 | LOC100516838, LOC100737195, STRIP2, AHCYL2 | 
| 6 | 115147146 | 115788549 | 0.081 | — | 
| 16 | 37793490 | 38004706 | 0.081 | — | 
| 6 | 107975607 | 108138639 | 0.080 | — | 
| 16 | 48647762 | 48792525 | 0.079 | LOC106504115, MAST4 | 
| 4 | 13581654 | 13825367 | 0.077 | LOC102164882 | 
| 16 | 47786015 | 47968058 | 0.077 | ERBB2IP, LOC102167060 | 
| 15 | 65327301 | 65866223 | 0.074 | UGGT1 | 
| 2 | 46429654 | 46587388 | 0.074 | — | 
| 7 | 34708292 | 34803564 | 0.072 | — | 
| 2 | 159763907 | 159898148 | 0.071 | — | 
| 1 | 16981336 | 17160649 | 0.071 | CCDC170 | 
| 2 | 51076948 | 51244889 | 0.070 | — | 
Gene abbreviations: DST = dystonin; FMNL2 = formin like 2; GPR17 = G protein-coupled receptor 17; LIMS2 = LIM zinc finger domain containing 2; TTR = transthyretin; ASXL3 = additional sex combs like 3; STRIP2 = striatin interacting protein 2; AHCYL2 = adenosylhomocysteinase like 2; MAST4 = microtubule associated serine/threonine kinase family member 4; ERBB2IP = erbb2 interacting protein; UGGT1 = UDP-glucose glycoprotein glucosyltransferase 1; CCDC170 = coiled-coil domain containing 170.
aChromosome number of the pig genome for which the SNP window location is mapped.
bSNP window positions start location on the chromosome.
cSNP window position end location on the chromosome.
dPercentage of variance explained by five SNP windows.
eGenes located within the SNP window.