Table 4.
Phenotypic variance explained by SNP windows for delta TS prior to puberty (prepubertal ΔTS)
| SSCa | Position start (bp)b | Position end (bp)c | Variance explained (%)d | Candidate gene(s)e |
|---|---|---|---|---|
| 3 | 121853700 | 122019392 | 0.044 | LOC100521960, FKBP1B, ATAD2B |
| 15 | 126029433 | 126285452 | 0.042 | ERBB4 |
| 15 | 25747414 | 25910541 | 0.041 | — |
| 1 | 271950519 | 272028559 | 0.038 | — |
| 9 | 140242929 | 140385683 | 0.038 | — |
| 15 | 125958213 | 126098646 | 0.037 | ERBB4 |
| 3 | 121766459 | 121896763 | 0.037 | ITSN2, LOC100521960, FKBP1B |
| 9 | 142991886 | 143124394 | 0.036 | — |
| 4 | 12197136 | 12282429 | 0.035 | — |
| 15 | 127761392 | 127886086 | 0.035 | IKZF2, LOC100737978 |
| 15 | 126098646 | 126467297 | 0.034 | ERBB4 |
| 8 | 19747348 | 19780058 | 0.034 | — |
| 15 | 136273347 | 136352463 | 0.034 | — |
| 17 | 59360910 | 59447126 | 0.034 | ATP9A |
| 1 | 271984966 | 272080412 | 0.034 | LOC100153054 |
| 9 | 143029683 | 143164935 | 0.033 | — |
| 4 | 12025385 | 12095880 | 0.033 | — |
| 15 | 136764149 | 136868267 | 0.033 | EPHA4, LOC102159610 |
| 7 | 9126277 | 9208606 | 0.033 | — |
| 9 | 143124394 | 143242124 | 0.033 | RPS6KC1 |
| 15 | 136981095 | 137108151 | 0.033 | LOC106506372 |
| 17 | 59314509 | 59400449 | 0.032 | NFATC2, ATP9A |
| 4 | 12237013 | 12315209 | 0.032 | — |
| 15 | 136181273 | 136319027 | 0.032 | — |
Gene abbreviations: FKBP1B = FK506 binding protein 1B; ATAD2B = ATPase family, AAA domain containing 2B; ERBB4 = erb-b2 receptor tyrosine kinase 4; ATP9A = ATPase phospholipid transporting 9A (putative); EPHA4 = EPH receptor A4; RPS6KC1 = ribosomal protein S6 kinase C1; NFATC2 = nuclear factor of activated T-cells 2; ATP9A = ATPase phospholipids’ transporting 9A.
aChromosome number of the pig genome for which the SNP window location is mapped.
bSNP window positions start location on the chromosome.
cSNP window position end location on the chromosome.
dPercentage of variance explained by five SNP windows.
eCandidate genes located within the SNP window.