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. 2018 May 12;96(7):2553–2566. doi: 10.1093/jas/sky170

Table 2.

Enriched Gene Ontology (GO) terms and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways for 644 genes in the association weight matrix (AWM)

GO term/KEGG pathway Category P-value AWM gene count Gene count in each category
Glycoprotein biosynthetic process GO_BP 6.09E-04 10 80
Glycoprotein metabolic process GO_BP 6.19E-04 11 97
Transmembrane transport GO_BP 0.0030 23 389
Protein amino acid glycosylation GO_BP 0.0044 8 69
Biopolymer glycosylation GO_BP 0.0044 8 69
Glycosylation GO_BP 0.0044 8 69
Generation of a signal involved in cell-cell signaling GO_BP 0.0058 6 39
Enzyme linked receptor protein signaling pathway GO_BP 0.0084 11 138
Neurotransmitter secretion GO_BP 0.0155 4 18
Multicellular organismal movement GO_BP 0.0170 3 7
Musculoskeletal movement GO_BP 0.0170 3 7
Neuropeptide signaling pathway GO_BP 0.0177 6 51
Ion transport GO_BP 0.0187 25 511
Biological adhesion GO_BP 0.0214 17 306
Cell adhesion GO_BP 0.0214 17 306
Extracellular structure organization GO_BP 0.0217 7 73
Cation homeostasis GO_BP 0.0219 9 115
Exocytosis GO_BP 0.0238 6 55
Cellular calcium ion homeostasis GO_BP 0.0332 6 60
Regulation of cell morphogenesis GO_BP 0.0334 5 41
Calcium ion homeostasis GO_BP 0.0375 6 62
Synaptic vesicle transport GO_BP 0.0411 3 11
Cellular metal ion homeostasis GO_BP 0.0446 6 65
Metal ion transport GO_BP 0.0476 15 285
Cell-cell adhesion GO_BP 0.0495 9 135
Calcium ion binding GO_MF 4.39E-05 33 528
Ion binding GO_MF 7.70E-05 99 2,439
Cation binding GO_MF 2.45E-04 96 2,415
Metal ion binding GO_MF 2.60E-04 95 2,387
Sialyltransferase activity GO_MF 0.0022 5 20
Ion channel activity GO_MF 0.0044 17 268
Substrate-specific channel activity GO_MF 0.0049 17 271
Passive transmembrane transporter activity GO_MF 0.0056 17 275
Channel activity GO_MF 0.0056 17 275
α-N-acetylneuraminate α-2,8-sialyltransferase activity GO_MF 0.0077 3 5
Manganese ion binding GO_MF 0.0105 7 65
Transition metal ion binding GO_MF 0.0307 62 1,698
ATP binding GO_MF 0.0354 40 1,018
Cation:cation antiporter activity GO_MF 0.0379 3 11
Adenyl ribonucleotide binding GO_MF 0.0397 40 1,027
Cation channel activity GO_MF 0.0476 10 165
O-Glycan biosynthesis KEGG_Pathway 0.0020 6 30
Axon guidance KEGG_Pathway 0.0026 11 114
Glycosphingolipid biosynthesis KEGG_Pathway 0.0083 4 14
Phosphatidylinositol signaling system KEGG_Pathway 0.0219 7 71
Lysosome KEGG_Pathway 0.0232 9 113
MAPK1 signaling pathway KEGG_Pathway 0.0271 15 257
Arrhythmogenic right ventricular cardiomyopathy (ARVC) KEGG_Pathway 0.0498 6 65

1MAPK = mitogen-activated protein kinase.