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. 2018 Apr 20;14(6):2867–2880. doi: 10.1021/acs.jctc.7b01143

Table 1. A Comparison of Computational Costs for Different Free Energy Calculations Using L1-L9 Ligand Alchemical Transformation Bound to Thrombin (∼60k Atoms)a.

calculation type number of cores wall clock time (hrs) core hours
TIES 8320 5.75 47840
schemes I/II 83200 6.82 567424
schemes III/IV 8320 6.82 56742
a

All the data are taken from 4 ns duration production MD simulations performed on SuperMUC, a machine at the Leibniz Supercomputing Center (LRZ).