Table 1. A Comparison of Computational Costs for Different Free Energy Calculations Using L1-L9 Ligand Alchemical Transformation Bound to Thrombin (∼60k Atoms)a.
calculation type | number of cores | wall clock time (hrs) | core hours |
---|---|---|---|
TIES | 8320 | 5.75 | 47840 |
schemes I/II | 83200 | 6.82 | 567424 |
schemes III/IV | 8320 | 6.82 | 56742 |
All the data are taken from 4 ns duration production MD simulations performed on SuperMUC, a machine at the Leibniz Supercomputing Center (LRZ).