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. 2016 Nov 11;1(1):69–76. doi: 10.1016/j.ncrna.2016.11.001

Table 1.

Databases for long non coding RNA.

Database Functions/Information Website
LNCipedia Annotated human database lncRNAs transcript sequences and structural patterns www.lncipedia.org
DIANA-LncBase Predicted miRNA recognition elements (MREs) on human and mouse lncRNAs experimentally verified and computationally http://diana.imis.athena.innovation.gr/DianaTool
CHIPBase An open decoding transcriptional database for regulatory networks of non coding RNAs and protein coding genes from CHIP-seq data Deepbase.sysu.edu.cn/chipbase
Noncode v.3.0 Annotation of long non coding RNAs integratively excluding t-RNAs and rRNAs www.ebi.ac.uk/miriam/main/collections/MIR:00000248
lncRNAdb The reference database for functional comprehensive annotations of eukaryotic long non coding RNA (lncRNAs) www.lncrnadb.org
lnRNome Preliminary built compared with human genome program. Genome.igib.res.in/lncRNome
The functional lncRNAs database A database of mammalian long non protein coding repository transcripts to search a specific lncRNAs. Currently, the database contains lncRNAs from Human, Mouse and Rat www.valadkhanlab.org