Figure 3.

Divergence of Wound Responses among Orthologous Genes.

(A) Number of orthologous genes with |log₂(FC)| > 2 in the wound response clusters as defined in Figure 2A. Gray, orthologous genes from both species were in the same cluster; cyan, the S. lycopersicum (Sl) ortholog is in the indicated cluster but not the S. pennellii one; orange, the S. pennellii (Sp) ortholog is in the indicated cluster but not the S. lycopersicum one.

(B) Percentage of the orthologous genes that are considered to have consistent regulatory patterns (in the same cluster) in each cluster.

(C) to (F) Heat maps showing the differential expression levels [log₂(FC)] of orthologous genes in UNNN (C), UUNN (D), NUNN (E), and NDNN (F) clusters. The bars on the left of each heat map are colored the same way as in (A). The dotted rectangles highlight differential expression patterns discussed in the main text.