Table 1. Species and genomes list.
This shows the representative set of 52 Lactobacillus species and sub-species used in this study. Accession numbers and naming conventions are included.
| Genus | Species | Subspecies | Strain | Accession no. | Naming convention | Locus tag |
|---|---|---|---|---|---|---|
| Lactobacillus | acidipiscis | KCTC 13900 | NZ_BACS00000000 | L_acidipiscis | GSS | |
| Lactobacillus | acidophilus | NCFM | NC_006814 | L_acidophilus | LBA | |
| Lactobacillus | algidus | DSM 15638 | NZ_AZDI00000000 | L_algidus | FC66 | |
| Lactobacillus | amylolyticus | DSM 11664 | NZ_ADNY00000000 | L_amylolyticus | HMPREF0493 | |
| Lactobacillus | amylovorus | GRL1118 | NC_017470 | L_amylovorus | LAB52 | |
| Lactobacillus | animalis | DSM 20602 | NZ_AEOF00000000 | L_animalis | LACAN | |
| Lactobacillus | aquaticus | DSM 21051 | NZ_AYZD00000000 | L_aquaticus | FC19 | |
| Lactobacillus | brevis | ATCC 367 | NC_008497 | L_brevis | LVIS | |
| Lactobacillus | buchneri | CD034 | NC_018610 | L_buchneri | LBUCD034 | |
| Lactobacillus | cacaonum | DSM 21116 | NZ_AYZE00000000 | L_cacaonum | FC80 | |
| Lactobacillus | casei | DSM 20011 | NZ_AZCO00000000 | L_casei | FC13 | |
| Lactobacillus | coryniformis | torquens | DSM 20004 | NZ_AEOS00000000 | L_coryniformis_t | EWE |
| Lactobacillus | crispatus | ST1 | NC_014106 | L_crispatus | LCRIS | |
| Lactobacillus | curvatus | CRL 705 | NZ_AGBU00000000 | L_curvatus | CRL705 | |
| Lactobacillus | delbrueckii | bulgaricus | ATCC BAA-365 | NC_008529 | L_delbrueckii_b | LBUL |
| Lactobacillus | farciminis | DSM 20184 | NZ_AEOT00000000 | L_farciminis | LACFC | |
| Lactobacillus | fermentum | CECT 5716 | NC_017465 | L_fermentum | LC40 | |
| Lactobacillus | floricola | DSM 23037 | NZ_AYZL00000000 | L_floricola | FC86 | |
| Lactobacillus | gallinarum | DSM 10532 | NZ_BALB00000000 | L_gallinarum | JCM2011 | |
| Lactobacillus | gasseri | ATCC 33323 | NC_008530 | L_gasseri | LGAS | |
| Lactobacillus | helveticus | CNRZ32 | NC_021744 | L_helveticus | LHE | |
| Lactobacillus | hilgardii | DSM 20176 | NZ_ACGP00000000 | L_hilgardii | HMPREF0519 | |
| Lactobacillus | hominis | DSM 23910 | NZ_CAKE00000000 | L_hominis | BN55 | |
| Lactobacillus | iners | DSM 13335 | NZ_ACLN00000000 | L_iners | HMPREF0520 | |
| Lactobacillus | jensenii | DSM 20557 | NZ_AYYU00000000 | L_jensenii | FC45 | |
| Lactobacillus | johnsonii | NCC 533 | NC_005362 | L_johnsonii | LJ | |
| Lactobacillus | kimchicus | JCM_15530 | NZ_AZCX00000000 | L_kimchicus | FC96 | |
| Lactobacillus | lindneri | DSM 20690 | NZ_JQBT00000000 | L_lindneri | IV52 | |
| Lactobacillus | mali | DSM 20444 | NZ_AKKT00000000 | L_mali | LMA | |
| Lactobacillus | mindensis | DSM 14500 | NZ_AZEZ00000000 | L_mindensis | FD29 | |
| Lactobacillus | mucosae | LM1 | NZ_CP011013 | L_mucosae | LBLM1 | |
| Lactobacillus | nasuensis | JCM_17158 | NZ_AZDJ00000000 | L_nasuensis | FD02 | |
| Lactobacillus | oeni | DSM 19972 | NZ_AZEH00000000 | L_oeni | FD46 | |
| Lactobacillus | oris | F0423 | NZ_AFTL00000000 | L_oris | HMPREF9102 | |
| Lactobacillus | otakiensis | DSM 19908 | NZ_BASH00000000 | L_otakiensis | LOT | |
| Lactobacillus | parabuchneri | DSM 5707 | NZ_AZGK00000000 | L_parabuchneri | FC51 | |
| Lactobacillus | paracasei | N1115 | NZ_CP007122 | L_paracasei | AF91 | |
| Lactobacillus | pasteurii | DSM 23907 | NZ_CAKD00000000 | L_pasteurii | BN53 | |
| Lactobacillus | pentosus | DSM 20314 | NZ_AZCU00000000 | L_pentosus | FD24 | |
| Lactobacillus | plantarum | 16 | NC_021514 | L_plantarum | LP16 | |
| Lactobacillus | reuteri | DSM 20016 | NC_009513 | L_reuteri | LREU | |
| Lactobacillus | rhamnosus | GG | NC_013198 | L_rhamnosus | LGG | |
| Lactobacillus | rossiae | DSM 15814 | NZ_AZFF00000000 | L_rossiae | FD35 | |
| Lactobacillus | ruminis | ATCC 27782 | NC_015975 | L_ruminis | LRC | |
| Lactobacillus | sakei | sakei | DSM 20017 | NZ_BALW00000000 | L_sakei_s | JCM1157 |
| Lactobacillus | salivarius | CECT 5713 | NC_017481 | L_salivarius | CECT 5713 | |
| Lactobacillus | sanfranciscensis | TMW 1.1304 | NC_015978 | L_sanfranciscensis | LSA | |
| Lactobacillus | suebicus | DSM 5007 | NZ_BACO00000000 | L_suebicus | GSK | |
| Lactobacillus | sunkii | DSM 19904 | NZ_AZEA00000000 | L_sunkii | FD17 | |
| Lactobacillus | vaginalis | DSM 5837 | NZ_ACGV00000000 | L_vaginalis | HMPREF0549 | |
| Lactobacillus | versmoldensis | DSM 14857 | NZ_BACR00000000 | L_versmoldensis | GSQ | |
| Lactobacillus | zymae | DSM 19395 | NZ_AZDW00000000 | L_zymae | FD38 |