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. 2018 Jun 1;164(6):896–907. doi: 10.1099/mic.0.000669

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© 2018 The Authors

This is an open access article under the terms of the Creative Commons Attribution 4.0 International License, which permits unrestricted use, distribution and reproduction in any medium, provided the original author and source are credited.

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Fig. 4. — Phasotypes for the five most variable genes in individual bird samples. Binary ON/OFF data for each gene were coded as 1 for ON and 0 for OFF. Binary values were combined for the five most variable genes to generate a five gene phasotype with the following order: CJJ81176_0086, CJJ81176_1160, CJJ81176_1312, CJJ81176_1419 and CJJ81176_1421. Frequencies were determined from analysis of up to 30 colonies derived from the inoculum and each bird sample.