Table 2.
Control Sample Results Across Participating Laboratories
Laboratory | Sample | ALK fusion | ROS1 fusion | RET fusion | NTRK1 fusion | ALK 3′/5′ imbalance | ROS1 3′/5′ imbalance | RET 3′/5′ imbalance | NTRK 3′/5′ imbalance |
---|---|---|---|---|---|---|---|---|---|
INSERM | Cell Line RNA cocktaila | Detected | Detected | Detected | n/a | 0.0044 | 0.3031 | 0.0603 | n/a |
Kinki | Cell Line RNA cocktaila | Detected | Detected | Detected | n/a | 0.0405 | 0.4648 | 0.0434 | n/a |
ARUP | Cell Line RNA cocktaila | Detected | Detected | Detected | n/a | 0.0172 | 0.6141 | 0.0421 | n/a |
ARC-Net | Cell Line RNA cocktaila | Detected | Detected | Detected | n/a | 0.0086 | 0.3458 | 0.0353 | n/a |
Viollier | Cell Line RNA cocktaila | Detected | Detected | Detected | n/a | 0.043 | 0.3398 | 0.046 | n/a |
Radboudumc | Cell Line RNA cocktaila | Detected | Detected | Detected | n/a | 0.0414 | 0.2502 | 0.0856 | n/a |
CROM | Cell Line RNA cocktaila | Detected | Detected | Detected | n/a | 0.012 | 0.054 | 0.0813 | n/a |
IPATIMUP | Cell Line RNA cocktaila | Detected | Detected | Detected | n/a | 0.0238 | 0.2877 | 0.0539 | n/a |
Warwick | Cell Line RNA cocktaila | Detected | Detected | Detected | n/a | 0.0064 | 0.3 | 0.055 | n/a |
Queen’s | Cell Line RNA cocktaila | Detected | Detected | Detected | n/a | 0.0123 | 0.4158 | 0.0478 | n/a |
ARUP | FFPE cell block H2228 | Detected | n/a | n/a | n/a | 0.0312 | n/a | n/a | n/a |
ARUP | FFPE cell block HCC78 | n/a | Detected | n/a | n/a | n/a | 3.8313 | n/a | n/a |
ARUP | FFPE cell block LC-2/ad | n/a | n/a | Detected | n/a | n/a | n/a | 0.2521 | n/a |
Kinki | Fresh cells H3122 | Detected | n/a | n/a | n/a | 0.3165 | n/a | n/a | n/a |
ARUP | FFPE cell block KM-12 | n/a | n/a | n/a | Not covered | n/a | n/a | n/a | 0.076 |
aA mixture of RNA from three cell lines (H2228, HCC78, and LC-2/ad)