TABLE 4.
‘Pathogenic’ Germline Variants (Bin 1)
Gene | cDNA Nucleotide Change | rsID | Population | Reference |
---|---|---|---|---|
ATM | c.5932G>T | rs587779852 | US, Europe | 153,154 |
ATM | c.8266A>T | rs371638537 | US | 58 |
BRCA1 | c.5263_5264insC | rs80357906 | (Ashkenazi Jewish) US, Canada, Poland, Israel | 65,82,83,155–159 |
BRCA1 | c.68_69delAG* | rs386833395 | (Ashkenazi Jewish) US | 69,160 |
BRCA1 | c.66_67delAG* | rs796856605 | (Ashkenazi Jewish) US, Israel, Canada | 82,83,155,158,159,161,162 |
BRCA2 | c.5946delT | rs80359550 | (Ashkenazi Jewish) US, Israel, Canada | 69,81–83,156,158,159,161–166 |
BRCA2 | c.6591_6592delTG | rs80359605 | Germany, UK | 80,167,168 |
BRCA2 | c.9227G>A | rs80359187 | Germany, UK | 80,168 |
BRCA2 | c.10095delCinsGAATTATATCT | rs276174803 | Germany, UK | 80,168 |
CDKN2A | c.457G>T | rs45476696 | US | 60,69,169,170 |
CDKN2A | c.377T>A | rs104894098 | US | 60,68,69,169,171 |
CDKN2A | c.301G>T | rs104894094 | US, Italy | 60,68,69,111,169 |
CDKN2A | c.225_243del19 | rs730881674 | Netherlands, US | 68,69,169,172–174 |
CDKN2A | c.148C>T | rs864622636 | Germany, US | 69,175 |
CDKN2A | c.−34G>T | rs1800586 | US | 68,69,169,170 |
CHEK2 | c.1100delC | rs555607708 | Germany, Poland, US | 153,157,176 |
PALB2 | c.509_510delGA† | rs515726124 | Czech Republic, Poland, US | 60,89,157 |
PALB2 | c.508_509delAG† | - | Europe | 88 |
PALB2 | c.172_175delTTGT | rs180177143 | Poland, US | 65,157,177 |
SPINK1 | c.194+2T>C‡ | rs148954387 | (Japanese) Japan, Germany | 26,178 |
All germline variants are reported in patients with pancreatic cancer in multiple studies, and all variants except one SPINK1 variant are reported in familial pancreatic cancer cases.
Each symbol represents a group of variants that result in same cDNA and protein change.
Absent in familial pancreatic cancer study.
cDNA indicates complementary DNA; US, United States; UK, United Kingdom.