Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2018 Aug 17;19:103. doi: 10.1186/s13059-018-1479-0

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

PMC Copyright notice

Fig. 8 — Enrichment analyses of TE families within gene promoters. The y-axis represents the log2 ratio of the proportion (i.e., percentage in terms of number of copies) of each TE family observed in the promoter of genes (2 kb upstream the TSS) relative to their proportion at the whole subgenome level. Positive and negative values represent an over- and under-representation of a given family in the promoters, respectively. Log2 ratios were calculated for the three subgenomes independently (A green; B violet; D orange) and the three values were represented here as a stacked histogram. Only highly repeated families (500 copies or more) are represented, with 1 panel per superfamily. Families are ordered decreasingly along the x-axis according to the whole genome log2 ratio