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. 2018 Aug 14;6:e5207. doi: 10.7717/peerj.5207

Table 1. Primers used in the current study (A).

A
No. Gene F/R Sequence Genomic position Exon-intron junction Intron spanning Amplicon size (bp) Reference
1 RPL27 F ACAATCACCTAATGCCCACA chr17:43000081-43002884 146 This study
R GCCTGTCTTGTATCTCTCTTCAA
2 RPS29 F GCACTGCTGAGAGCAAGATG chr14:49577820-49586363 213 De Jonge et al. (2007)
R ATAGGCAGTGCCAAGGAAGA
3 OAZ1 F GGATCCTCAATAGCCACTGC chr19:2269621-2271410 150 De Jonge et al. (2007)
R TACAGCAGTGGAGGGAGACC
4 RPL30 F ACAGCATGCGGAAAATACTAC chr8:98041745-98042696 158 De Jonge et al. (2007)
R AAAGGAAAATTTTGCAGGTTT
5 LDHA F TTGTTGGGGTTGGTGCTGTT chr11:18396916-18399514 137 This study
R AAGGCTGCCATGTTGGAGAT
6 ACTB F CCTTGCACATGCCGGAG chr7:5529603-5530574 112 https://primerdepot.nci.nih.gov
R GCACAGAGCCTCGCCTT
7 RPS13 F CGTCCCCACTTGGTTGAAGTT chr11:17075584-17077438 129 This study
R CGTACTTGTGCAACACCATGT
8 GAPDH F GCATCCTGGGCTACACTGA chr12:6537873-6538138 162 Campos et al. (2009)
R CCACCACCCTGTTGCTGTA
9 TUBA1B F GTCGCCTTCGCCTCCTAATC chr12:49129610-49131330 146 This study
R TCACTTGGCATCTGGCCATC
10 PSMC5 F TTGACGGACCAGAGCAGATG chr17:63827498-63829528 124 This study
R CTCCGGAGGTTTTGGCTCTT
11 MTCH1 F CTTGGCGTAGGTGAAGAAGC chr6:36978607-36985885 123 https://primerdepot.nci.nih.gov
R CATCCCCTGCTCTACGTGAA
12 MKRN1 F GCAGCAAGGGATGACTTTGT chr7:140459862-140471905 98 https://primerdepot.nci.nih.gov
R TGTATTTATGGAGACCGCTGC
13 ERGIC3 F TCTCATGCTGCTACTGTTCCT chr20:35542342-35542833 152 https://pga.mgh.harvard.edu/primerbank/
R CAATACTCAGATAGGCACAAGGC
14 ADRM1 F CAATGCTCCTCATCCTGGTC chr20:62304519-62306228 91 https://primerdepot.nci.nih.gov
R GGAGGGTCTACGTGCTGAAG
15 RPL37A F TTCTGATGGCGGACTTTACC chr2:216499955-216501378 115 https://primerdepot.nci.nih.gov
R ATGAAGAGACGAGCTGTGGG
16 RPL5 F TCGTATAGCAGCATGAGCTTTC chr1:92837537-92840589 136 https://primerdepot.nci.nih.gov
R TGTTGCAGATTACATGCGCT
17 TSPAN31 F GGCTATTAACCGAAGCAAACAGA chr12:57746235-57746683 117 https://pga.mgh.harvard.edu/primerbank/
R GTGAGGTTGAATAAGCCACAACA
18 DARS F AGCCGCAAGAGTCAGGAGA chr2:135979349-135985450 124 https://pga.mgh.harvard.edu/primerbank/
R CCCGAACCAAAACTCGATCTG

Note:

Results from different tools on the internal control genes and their ranks as obtained using the validation samples (B).