Table 1. Primers used in the current study (A).
A | ||||||||
---|---|---|---|---|---|---|---|---|
No. | Gene | F/R | Sequence | Genomic position | Exon-intron junction | Intron spanning | Amplicon size (bp) | Reference |
1 | RPL27 | F | ACAATCACCTAATGCCCACA | chr17:43000081-43002884 | √ | √ | 146 | This study |
R | GCCTGTCTTGTATCTCTCTTCAA | |||||||
2 | RPS29 | F | GCACTGCTGAGAGCAAGATG | chr14:49577820-49586363 | √ | √ | 213 | De Jonge et al. (2007) |
R | ATAGGCAGTGCCAAGGAAGA | |||||||
3 | OAZ1 | F | GGATCCTCAATAGCCACTGC | chr19:2269621-2271410 | – | √ | 150 | De Jonge et al. (2007) |
R | TACAGCAGTGGAGGGAGACC | |||||||
4 | RPL30 | F | ACAGCATGCGGAAAATACTAC | chr8:98041745-98042696 | – | √ | 158 | De Jonge et al. (2007) |
R | AAAGGAAAATTTTGCAGGTTT | |||||||
5 | LDHA | F | TTGTTGGGGTTGGTGCTGTT | chr11:18396916-18399514 | – | √ | 137 | This study |
R | AAGGCTGCCATGTTGGAGAT | |||||||
6 | ACTB | F | CCTTGCACATGCCGGAG | chr7:5529603-5530574 | – | √ | 112 | https://primerdepot.nci.nih.gov |
R | GCACAGAGCCTCGCCTT | |||||||
7 | RPS13 | F | CGTCCCCACTTGGTTGAAGTT | chr11:17075584-17077438 | √ | √ | 129 | This study |
R | CGTACTTGTGCAACACCATGT | |||||||
8 | GAPDH | F | GCATCCTGGGCTACACTGA | chr12:6537873-6538138 | – | √ | 162 | Campos et al. (2009) |
R | CCACCACCCTGTTGCTGTA | |||||||
9 | TUBA1B | F | GTCGCCTTCGCCTCCTAATC | chr12:49129610-49131330 | – | √ | 146 | This study |
R | TCACTTGGCATCTGGCCATC | |||||||
10 | PSMC5 | F | TTGACGGACCAGAGCAGATG | chr17:63827498-63829528 | √ | √ | 124 | This study |
R | CTCCGGAGGTTTTGGCTCTT | |||||||
11 | MTCH1 | F | CTTGGCGTAGGTGAAGAAGC | chr6:36978607-36985885 | √ | √ | 123 | https://primerdepot.nci.nih.gov |
R | CATCCCCTGCTCTACGTGAA | |||||||
12 | MKRN1 | F | GCAGCAAGGGATGACTTTGT | chr7:140459862-140471905 | – | √ | 98 | https://primerdepot.nci.nih.gov |
R | TGTATTTATGGAGACCGCTGC | |||||||
13 | ERGIC3 | F | TCTCATGCTGCTACTGTTCCT | chr20:35542342-35542833 | √ | √ | 152 | https://pga.mgh.harvard.edu/primerbank/ |
R | CAATACTCAGATAGGCACAAGGC | |||||||
14 | ADRM1 | F | CAATGCTCCTCATCCTGGTC | chr20:62304519-62306228 | – | √ | 91 | https://primerdepot.nci.nih.gov |
R | GGAGGGTCTACGTGCTGAAG | |||||||
15 | RPL37A | F | TTCTGATGGCGGACTTTACC | chr2:216499955-216501378 | – | √ | 115 | https://primerdepot.nci.nih.gov |
R | ATGAAGAGACGAGCTGTGGG | |||||||
16 | RPL5 | F | TCGTATAGCAGCATGAGCTTTC | chr1:92837537-92840589 | – | √ | 136 | https://primerdepot.nci.nih.gov |
R | TGTTGCAGATTACATGCGCT | |||||||
17 | TSPAN31 | F | GGCTATTAACCGAAGCAAACAGA | chr12:57746235-57746683 | – | √ | 117 | https://pga.mgh.harvard.edu/primerbank/ |
R | GTGAGGTTGAATAAGCCACAACA | |||||||
18 | DARS | F | AGCCGCAAGAGTCAGGAGA | chr2:135979349-135985450 | – | √ | 124 | https://pga.mgh.harvard.edu/primerbank/ |
R | CCCGAACCAAAACTCGATCTG |
Note:
Results from different tools on the internal control genes and their ranks as obtained using the validation samples (B).