| CHROM |
Chromosome/contig name |
1 |
| POS |
Position |
10010 |
| ID |
ID assigned to this variant (UUID for CaVEMan data) |
81b61f98-f614-11e5-8014-d8d2535b31b0 |
| REF |
Reference allele at this position |
A |
| ALT |
Mutant allele at this position |
T |
| QUAL |
Quality score associated with this variant (“.” if blank) |
. |
| FILTER |
List of filter flags this variant fails (“PASS” if none fail) |
PASS |
| INFO |
List of key value pairs separated by a semicolon describing the variation. Keys and associated values described in the VCF header. See Table 15.10.2. for CaVEMan INFO field entries. |
DP = 90;MP = 1.0e + 00;GP = 5.8e-08;TG = TT/CT;TP = 9.9e-01; SG = TT/CC;SP = 7.1e-03 |
| FORMAT |
Colon-separated list of fields that constitute the entries under the NORMAL and TUMOUR headings. Keys and associated values are described in the VCF header. See Table 15.10.3. for CaVEMan FORMAT field entries. |
GT:FAZ:FCZ:FGZ:FTZ:RAZ:RCZ:RGZ:RTZ:PM |
| NORMAL |
Values described in the FORMAT field for the normal sample. |
0|0:0:0:1:20:0:1:0:10:3.1e-02 |
| TUMOUR |
Values described in the FORMAT field for the tumor sample. |
0|1:0:7:1:32:0:1:0:17:1.4e-01 |
