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| File | Type |
|---|---|
| T_vs_N.flagged.vcf.gz[.tbi] | Variant call format (bgzip compressed) |
| T_vs_N_wt.bam[.bai|.md5] | Pindel-aligned reads from the wild-type/normal sample in BAM format |
| T_vs_N_mt.bam[.bai|.md5] | Pindel-aligned reads from the mutant/tumour sample in BAM format |
| T_vs_N.germline.bed | BED file containing ranges of events highly likely to be germline |
