Table 3.
Pathways associated with candidate differentially expressed genes (DEGs) between ‘Tunisia’ and ‘White’ pomegranate cultivars in TP1_SP1 and TP2_SP2 comparisons.
| pathway | Common DEGs | Regulation | KO id | Annotation [EC no.] | log2(TP1/SP1) | P value | log2(TP2/SP2) | P value |
|---|---|---|---|---|---|---|---|---|
| Anthocyanin biosynthesis | Gglean030299.1 | Down | K12938 | anthocyanidin 5,3-O-glucosyltransferase (GT1) [EC:2.4.1.-] | −1.39 | 0.00 | −1.54 | 0.00 |
| Gglean024784.1 | Down | K18823 | cyanidin-3-O-glucoside 2′′-O-glucuronosyltransferase (UGAT) [EC:2.4.1.254] | −3.84 | 0.00 | −1.92 | 0.00 | |
| Gglean024783.1 | Up | 1.20 | 0.00 | 1.66 | 0.00 | |||
| Stilbenoid, diarylheptanoid biosynthesis | Gglean025205.1 | Down | — | — | −6.44 | 0.00 | −2.28 | 0.00 |
| Gglean018889.1 | Up | — | — | 4.07 | 0.00 | 1.37 | 0.00 | |
| Gglean000381.1 | Up | K17961 | cytochrome P450, family 82, subfamily G, polypeptide 1 [EC:1.14.-.-] | 5.09 | 0.00 | 6.11 | 0.00 | |
| Gglean026629.1 | Up | K05280 | flavonoid 3′-monooxygenase [EC:1.14.13.21] | 1.32 | 0.00 | 1.64 | 0.00 | |
| Gglean019885.1 | Down | K13260 | isoflavone 2′-hydroxylase [EC:1.14.13.89] | −3.02 | 0.00 | −2.66 | 0.00 | |
| Gglean019884.1 | Down | −2.71 | 0.00 | −2.18 | 0.00 | |||
| Gglean015246.1 | Down | — | — | −2.53 | 0.00 | −1.81 | 0.00 | |
| Gglean015686.1 | Down | K13065 | shikimate O-hydroxycinnamoyltransferase [EC:2.3.1.133] | −3.22 | 0.00 | −1.77 | 0.00 | |
| Gglean020272.1 | Up | 1.96 | 0.00 | 2.92 | 0.00 | |||
| Gglean004433.1 | Up | 1.78 | 0.00 | 1.87 | 0.00 | |||
| Gglean013382.1 | Up | 1.19 | 0.00 | 1.07 | 0.00 | |||
| Flavonoid biosynthesis | Gglean024449.1 | Down | K13082 | bifunctional dihydroflavonol 4-reductase (DFR) [EC:1.1.1.219] | −1.10 | 0.00 | −3.98 | 0.00 |
| Gglean009951.1 | Down | K00660 | chalcone synthase (CHS) [EC:2.3.1.74] | −1.50 | 0.00 | −3.11 | 0.00 | |
| Gglean012297.1 | Down | −1.25 | 0.00 | −1.56 | 0.00 | |||
| Gglean025015.1 | Down | K05280 | flavonoid 3′-monooxygenase [EC:1.14.13.21] | −2.64 | 0.00 | −3.69 | 0.00 | |
| Gglean027001.1 | Down | −2.66 | 0.00 | −1.77 | 0.00 | |||
| Gglean000166.1 | Down | −2.59 | 0.00 | −1.32 | 0.00 | |||
| Gglean001689.1 | Up | K05278 | flavonol synthase (FS) [EC:1.14.11.23] | 1.49 | 0.00 | 2.12 | 0.00 | |
| Gglean002078.1 | Down | −2.69 | 0.00 | −2.19 | 0.00 | |||
| Gglean018019.1 | Down | −1.06 | 0.00 | −1.11 | 0.00 | |||
| Gglean026620.1 | Up | K05277 | leucoanthocyanidin dioxygenase (LDOX/ANS) [EC:1.14.11.19] | 2.57 | 0.00 | 4.83 | 0.00 | |
| Gglean024550.1 | Up | K13081 | leucoanthocyanidin reductase [EC:1.17.1.3] | 1.10 | 0.00 | 1.94 | 0.00 | |
| Gglean002570.1 | Down | −3.16 | 0.00 | −1.02 | 0.00 | |||
| Gglean020650.1 | Down | K00475 | flavonoid 3′5′-hydroxylase (F35H) [EC:1.14.11.9] | −1.09 | 0.00 | −3.18 | 0.00 | |
| Phenylpropanoid biosynthesis | Gglean004943.1 | Down | K01904 | 4-coumarate–CoA ligase [EC:6.2.1.12] | −1.37 | 0.00 | −2.12 | 0.00 |
| Gglean004745.1 | Up | K01188 | beta-glucosidase [EC:3.2.1.21] | 1.33 | 0.00 | 5.81 | 0.00 | |
| Gglean014679.1 | Down | −1.53 | 0.00 | −2.84 | 0.00 | |||
| Gglean025214.1 | Down | −7.85 | 0.00 | −2.79 | 0.00 | |||
| Gglean026132.1 | Down | −1.07 | 0.00 | −2.50 | 0.00 | |||
| Gglean028143.1 | Down | −2.66 | 0.00 | −1.88 | 0.00 | |||
| Gglean023909.1 | Up | 3.22 | 0.00 | 2.82 | 0.00 | |||
| Gglean015153.1 | Down | K13066 | caffeic acid 3-O-methyltransferase [EC:2.1.1.68] | −2.14 | 0.00 | −1.06 | 0.00 | |
| Gglean028708.1 | Up | K18368 | caffeoylshikimate esterase [EC:3.1.1.-] | 1.33 | 0.00 | 1.61 | 0.00 | |
| Gglean008959.1 | Down | K09753 | cinnamoyl-CoA reductase [EC:1.2.1.44] | −1.39 | 0.00 | −2.07 | 0.00 | |
| Gglean003647.1 | Up | 1.84 | 0.00 | 1.81 | 0.00 | |||
| Gglean015001.1 | Down | K00083 | cinnamyl-alcohol dehydrogenase [EC:1.1.1.195] | −1.60 | 0.00 | −3.79 | 0.00 | |
| Gglean015003.1 | Down | −1.59 | 0.00 | −4.39 | 0.00 | |||
| Gglean002744.1 | Down | −1.20 | 0.00 | −1.26 | 0.00 | |||
| Gglean017886.1 | Up | 3.65 | 0.00 | 1.87 | 0.00 | |||
| Gglean031042.1 | Down | K08237 | hydroquinone glucosyltransferase [EC:2.4.1.218] | −1.17 | 0.00 | −2.32 | 0.00 | |
| Gglean018745.1 | Down | K00430 | peroxidase [EC:1.11.1.7] | −1.15 | 0.00 | −2.60 | 0.00 | |
| Gglean004996.1 | Up | 1.61 | 0.00 | 1.14 | 0.00 | |||
| Gglean004579.1 | Down | −3.24 | 0.00 | −2.24 | 0.00 | |||
| Gglean027772.1 | Down | −1.58 | 0.00 | −3.38 | 0.00 | |||
| Gglean022575.1 | Down | −1.12 | 0.00 | −1.02 | 0.00 | |||
| Gglean018674.1 | Down | −1.11 | 0.00 | −3.38 | 0.00 | |||
| Gglean007149.1 | Down | −1.75 | 0.00 | −1.84 | 0.00 | |||
| Gglean016128.1 | Down | −2.31 | 0.00 | −2.94 | 0.00 | |||
| Gglean019365.1 | Up | 1.83 | 0.00 | 1.87 | 0.00 | |||
| Gglean022649.1 | Up | 5.02 | 0.00 | 4.12 | 0.00 | |||
| Gglean029864.1 | Down | −1.01 | 0.00 | −1.77 | 0.00 |