Table 2.
Whole-genome QTL results with the horizontal position gain (HPG).
| SNP ID | Cytogenic location | Closest gene | Location | Beta | P-value | P-value (age-controlled) |
|---|---|---|---|---|---|---|
| SZ group | ||||||
| rs6587628 | 1q21.3 | THEM4 | intron | −0.1673 | 1.11E-08 | 2.79E-08 |
| rs4845388 | 1q21.3 | THEM4 | intron | −0.1673 | 1.11E-08 | 2.79E-08 |
| rs6685291 | 1q21.3 | THEM4 | intron | −0.1673 | 1.11E-08 | 2.79E-08 |
| rs6691350 | 1q21.3 | THEM4 | intron | −0.1673 | 1.11E-08 | 2.79E-08 |
| rs1552606 | 1q21.3 | THEM4 | intergenic | −0.1673 | 1.11E-08 | 2.79E-08 |
| rs3007682 | 1q21.3 | THEM4 | intergenic | −0.1673 | 1.11E-08 | 2.79E-08 |
| rs1490191 | 1q21.3 | THEM4 | intergenic | −0.1379 | 7.40E-09 | 1.88E-08 |
| rs3007700 | 1q21.3 | S100A10 | intergenic | −0.1673 | 1.11E-08 | 2.79E-08 |
| rs2999525 | 1q21.3 | S100A10 | intergenic | −0.1673 | 1.11E-08 | 2.79E-08 |
| rs2999529 | 1q21.3 | S100A10 | intergenic | −0.1673 | 1.11E-08 | 2.79E-08 |
| rs1532132 | 1q21.3 | S100A10 | intergenic | −0.1673 | 1.11E-08 | 2.79E-08 |
| rs1387835 | 1q21.3 | S100A10 | intergenic | −0.1673 | 1.11E-08 | 2.79E-08 |
| rs1387834 | 1q21.3 | S100A10 | intergenic | −0.1673 | 1.11E-08 | 2.79E-08 |
| rs2999538 | 1q21.3 | S100A10 | intergenic | −0.1673 | 1.11E-08 | 2.79E-08 |
| rs6964854 | 7p12.1 | POM121L12 | intergenic | −0.182 | 3.73E-08 | 9.01E-08 |
| rs6104543 | 20q13.12 | CDH22 | intergenic | −0.1984 | 2.34E-08 | 3.88E-08 |
| HC group | ||||||
| rs17393065 | 2p23.1 | GALNT14 | intergenic | −0.149 | 2.595E-09 | 1.79E-09 |
| ALL group (HC + SZ group) | ||||||
| rs1490191 | 1q21.3 | THEM4 | intergenic | −0.0934 | 7.03E-09 | 1.09E-08 |
Beta: regression coefficient; P-value: Wald test asymptotic p-value; P-value (age-controlled): p-value controlled by age.