Table 3.

Differentially remodeled genes associated with food allergy at 12 months

	DNA methylation						Gene expression
	ProbeID	Chr	Start	Stop	Deltabeta	FDR	Chr	Start	Stop	Log FC	FDR	Gene
1	cg12592365	Chr17	78,765,948	78,765,949	−0.05	0.00	Chr17	78,518,619	78,940,171	0.439240548	0.00	RPTOR
2	cg02660643	Chr16	87,491,587	87,491,588	−0.05	0.00	Chr16	87,439,852	87,525,651	0.411181941	0.01	ZCCHC14
3	cg27403618	Chr1	209,907,350	209,907,351	−0.04	0.00	Chr1	209,859,510	209,908,295	1.342450486	0.04	HSD11B1
4	cg22152180	Chr1	172,558,180	172,558,181	−0.04	0.00	Chr1	172,501,489	172,580,971	−0.221601774	0.02	SUCO
5	cg26319797	Chr2	238,904,315	238,904,316	−0.03	0.00	Chr2	238,875,469	238,951,236	0.424532964	0.00	UBE2F
6	cg25298754	Chr3	111,314,102	111,314,103	−0.03	0.00	Chr3	111,311,747	111,314,290	0.919262265	0.03	ZBED2
7	cg09775648	Chr2	190,309,186	190,309,187	−0.05	0.01	Chr2	190,306,159	190,340,291	0.384026907	0.03	WDR75
8	cg22992505	Chr2	158,712,427	158,712,428	−0.04	0.01	Chr2	158,592,958	158732,374	0.295193799	0.05	ACVR 1
9	cg00545580	Chr17	78,571,214	78,571,215	−0.05	0.01	Chr17	78,518,619	78,940,171	0.439240548	0.00	RPTOR
10	cg05175803	Chr11	44,597,119	44,597,120	−0.01	0.01	Chr11	44,585,977	44,641,913	0.445341065	0.01	CD82
11	cg24278087	Chr11	65,904,369	65,904,370	−0.03	0.01	Chr11	65,837,834	66,012,218	0.409525829	0.00	PACS1
12	cg16001422	Chr8	145,022,842	145,022,843	−0.04	0.02	Chr8	144,989,321	14,5050,902	0.554875897	0.02	PLEC
13	cg03116016	Chr16	15,583,606	15,583,607	−0.03	0.02	Chr16	15,528,152	15,718,885	0.920652897	0.01	C16orf45
14	cg25279613	Chr7	24,956,523	24,956,524	−0.06	0.02	Chr7	24,836,158	25,021,253	0.276014688	0.03	OSBPL3
15	cg00957665	Chr10	104,406,345	104,406,346	−0.01	0.02	Chr10	104,404,253	104,418,164	0.496130053	0.00	TRIM8
16	cg25867265	Chr1	66,737,176	66,737,177	0.06	0.03	Chr1	66,258,197	66,840,259	−0.443748368	0.05	PDE4B
17	cg20995327	Chr14	99,684,844	99,684,845	−0.03	0.03	Chr14	99,635,624	99,737,861	−0.250717631	0.04	BCL11B
18	cg17355385	Chr20	62,368,837	62,368,838	0.05	0.03	Chr20	62,366,815	62,370,456	−0.634130427	0.03	LIME1
19	cg20930706	Chr12	12,595,583	12,595,584	−0.02	0.03	Chr12	12,510,013	12,619,840	0.347785134	0.01	LOH12CR1
20	cg14174367	Chr1	202,128,508	202,128,509	−0.03	0.04	Chr1	202,116,141	202,130,716	0.239397286	0.05	PTPN7
21	cg24323726	Chr3	111,314,186	111,314,187	−0.03	0.04	Chr3	111,311,747	111,314,290	0.919262265	0.03	ZBED2
22	cg21410897	Chr2	69,735,185	69,735,186	−0.02	0.04	Chr2	69,688,532	69,901,481	0.284488561	0.03	AAK1
23	cg11903019	Chr6	154,560,711	154,560,712	−0.01	0.04	Chr6	154,475,631	154,677,926	−0.471902349	0.01	IPCEF1
24	cg04599190	Chr5	66,306,763	66,306,764	−0.02	0.04	Chr5	65,892,176	66,465,423	0.382960527	0.01	MAST4
25	cg10502206	Chr2	145,182,344	145,182,345	−0.02	0.04	Chr2	145,141,648	145,282,147	0.778825531	0.05	ZEB2
26	cg15928524	Chr17	17,599,543	17,599,544	−0.04	0.05	Chr17	17,584,787	17,714,767	0.312294786	0.02	RAI1

FDR: false discovery rate P value