Table 3.
Codon–anticodon recognition pattern and codon usage for the F. dibotrys chloroplast genome.
Codon | Amino acid | Count | RSCU | tRNA | Codon | Amino acid | Count | RSCU | tRNA |
---|---|---|---|---|---|---|---|---|---|
UUU | F | 2243 | 1.19 | trnF-GAA | UAU | Y | 1480 | 1.38 | trnY-GUA |
UUC | F | 1526 | 0.81 | UAC | Y | 668 | 0.62 | ||
UUA | L | 1081 | 1.24 | trnL-UAA | UAA | * | 1279 | 1.27 | |
UUG | L | 1112 | 1.28 | trnL-CAA | UAG | * | 814 | 0.81 | |
CUU | L | 1098 | 1.26 | trnL-UAG | CAU | H | 928 | 1.4 | trnH-GUG |
CUC | L | 687 | 0.79 | CAC | H | 397 | 0.6 | ||
CUA | L | 782 | 0.9 | CAA | Q | 1105 | 1.38 | trnQ-UUG | |
CUG | L | 461 | 0.53 | CAG | Q | 500 | 0.62 | ||
AUU | I | 1770 | 1.2 | trnI-GAU | AAU | N | 1785 | 1.36 | trnN-GUU |
AUC | I | 1146 | 0.77 | AAC | N | 848 | 0.64 | ||
AUA | I | 1525 | 1.03 | trnI-CAU | AAA | K | 2278 | 1.35 | trnK-UUU |
AUG | M | 907 | 1 | trnM-CAU | AAG | K | 1098 | 0.65 | |
GUU | V | 832 | 1.35 | trnV-GAC | GAU | D | 983 | 1.37 | trnD-GUC |
GUC | V | 490 | 0.79 | GAC | D | 455 | 0.63 | ||
GUG | V | 396 | 0.64 | GAA | E | 1299 | 1.37 | trnE-UUC | |
GUA | V | 750 | 1.22 | trnV-UAC | GAG | E | 595 | 0.63 | |
UCU | S | 1107 | 1.4 | trnS-GGA | UGU | C | 690 | 1.19 | trnC-GCA |
UCC | S | 888 | 1.12 | UGC | C | 472 | 0.81 | ||
UCG | S | 690 | 0.87 | UGA | * | 924 | 0.92 | ||
UCA | S | 832 | 1.05 | trnS-UGA | UGG | W | 737 | 1 | trnW-CCA |
CCU | P | 699 | 1.09 | trnP-UGG | CGU | R | 405 | 0.72 | trnR-ACG |
CCC | P | 588 | 0.92 | CGC | R | 275 | 0.49 | trnR-UCU | |
CCA | P | 802 | 1.25 | CGA | R | 611 | 1.09 | ||
CCG | P | 469 | 0.73 | CGG | R | 420 | 0.75 | ||
ACU | T | 729 | 1.19 | AGA | R | 1047 | 1.86 | ||
ACC | T | 609 | 1 | AGG | R | 615 | 1.09 | ||
ACG | T | 434 | 0.71 | trnT-GGU | AGU | S | 701 | 0.88 | trnS-GCU |
ACA | T | 672 | 1.1 | trnT-UGU | AGC | S | 540 | 0.68 | |
GCU | A | 526 | 1.27 | trnA-UGC | GGU | G | 584 | 0.99 | trnG-GCC |
GCC | A | 391 | 0.94 | GGC | G | 386 | 0.65 | ||
GCA | A | 455 | 1.1 | GGG | G | 610 | 1.03 | ||
GCG | A | 290 | 0.7 | GGA | G | 790 | 1.33 | trnG-UCC |