Table 3.

Coordinates (hg19) of critical regions of 12 SCZ‐associated CNVs

Chr*	Start	End	Location	Type	Likely candidate gene(s)	Criteria for defining this CNV b
chr1	146,527,987	147,394,444	1q21.1	Deletion	.	Size >50% of critical region
chr1	146,527,987	147,394,444	1q21.1	Duplication	.	Size >50% of critical region
chr2	50,145,643	51,259,674	2p16.3	Deletion	NRXN1	Deletion of at least one exon (NM_004801)
chr3	195,720,167	197,354,826	3q29	Deletion	DLG1	Size >50% of critical region
chr7 c	72,744,915	74,142,892	7q11.23	Duplication	STX1A	Size >50% of critical region
chr15	22,805,313	23,094,530	15q11.2	Deletion	CYFIP1	Size >50% of critical region
chr15** c	23,561,268	28,390,339	15q11.2‐q13.1	Duplication	UBE3A and GABA receptor gene cluster	Full critical region
chr15	31,080,645	32,462,776	15q13.3	Deletion	.	Size >50% of critical region
chr16	15,511,655	16,293,689	16p13.11	Duplication	MYH11	Size >50% of critical region
chr16	21,950,135	22,431,889	16p12.1	Deletion	UQCRC2	Size >50% of critical region
chr16	29,650,840	30,200,773	16p11.2	Duplication	ALDOA, CORO1A, MAPK3, TAOK2	Size >50% of critical region
chr22 c	19,037,332	21,466,726	22q11.2	Deletion	PI4KA, SEPT5	Size >50% of critical region

Chr = chromosome.

^aCoordinates taken from Supporting Information of Kendall et al., 2016 (except for **). For analyses, the liftOver tool was used to map from hg19 to hg18 coordinates, specifying minimum ratio of bases that must remap as 0.95.

^bSee Supporting Information Table S4 of Kendall et al. (2016).

^cCNVs not observed in this study population.