Antibodies |
Rabbit polyclonal antibody anti-TRPA1 |
Novus |
Cat# NB110-40763; RRID: AB_715124 |
Rabbit polyclonal antibody anti-TRPA1 |
Sigma-Aldrich |
Cat# HPA026630; RRID: AB_1858360 |
Rabbit polyclonal antibody anti-Cleaved Caspase-3 (Asp175) |
Cell Signaling Technology |
Cat# 9661; RRID: AB_2341188 |
Mouse monoclonal antibody anti-Ki-67 |
Dako |
Cat# M7240; RRID: AB_2142367 |
Mouse monoclonal anti-Flag M2 antibody |
Sigma-Aldrich |
Cat# F1804; RRID: AB_259529 |
Mouse monoclonal antibody anti-beta-Actin |
Sigma-Aldrich |
Cat# A1978; RRID: AB_476692 |
Rabbit polyclonal antibody anti-Phospho-4E-BP1 (Ser65) |
Cell Signaling Technology |
Cat# 9451; RRID: AB_330947 |
Rabbit monoclonal antibody anti-4E-BP1 |
Cell Signaling Technology |
Cat# 9644S; RRID: AB_10691384 |
Mouse monoclonal antibody anti-Phospho-S6 Ribosomal Protein (Ser240) |
Dako |
Cat# M7300; RRID: AB_2182542 |
Rabbit monoclonal antibody anti-S6 Ribosomal Protein |
Cell Signaling Technology |
Cat# 2217; RRID: AB_331355 |
Rabbit monoclonal antibody anti-Phospho-AKT (Thr308) |
Cell Signaling Technology |
Cat# 4056; RRID: AB_331163 |
Mouse monoclonal antibody anti-AKT |
Cell Signaling Technology |
Cat# 2920; RRID: AB_1147620 |
Rabbit monoclonal antibody anti-Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) |
Cell Signaling Technology |
Cat# 4370; RRID: AB_2315112 |
Rabbit polyclonal antibody anti-p44/42 MAPK (Erk1/2) |
Cell Signaling Technology |
Cat# 9102; RRID: AB_330744 |
Rabbit polyclonal antibody anti-Phospho-PYK2 (Tyr402) |
Cell Signaling Technology |
Cat# 3291S; RRID: AB_2300530 |
Mouse monoclonal antibody anti-PYK2 |
Cell Signaling Technology |
Cat# 3480S; RRID: AB_2174093 |
Rabbit monoclonal antibody anti-MCL-1 |
Cell Signaling Technology |
Cat# 5453S; RRID: AB_10694494 |
Rabbit polyclonal antibody anti-Phospho-SRC (Tyr416) |
Cell Signaling Technology |
Cat# 2101; RRID: AB_331697 |
Rabbit polyclonal antibody anti-SRC |
Cell Signaling Technology |
Cat# 2108; RRID: AB_331137 |
Mouse monoclonal antibody anti-Methylglyoxal |
Cell Biolabs, Inc |
Cat# STA-011 |
Rabbit polyclonal antibody anti-4 Hydroxynonenal |
Abcam |
Cat# ab46545; RRID: AB_722490 |
Mouse monoclonal antibody anti-8 Hydroxyguanosine |
Abcam |
Cat# ab48508; RRID: AB_867461 |
Biological Samples |
Unstained breast cancer tissue arrays |
US Biomax |
BR1504a |
Unstained normal breast tissue arrays |
US Biomax |
BN08111 |
Unstained lung cancer tissue arrays |
US Biomax |
BC041115d |
Unstained normal lung tissue arrays |
US Biomax |
LCN241 |
Chemicals, Peptides, and Recombinant Proteins |
AP-18 |
Sigma-Aldrich |
Cat# A7232, CAS: 55224-94-7 |
AM-0902 |
Schenkel et al., 2016 |
N/A |
Fura-2 |
Thermo Fisher Scientific |
Cat# F1201 |
N-Acetyl-L-cysteine |
Sigma-Aldrich |
Cat# A7250, CAS: 616-91-1 |
Hydrogen peroxide solution |
Sigma-Aldrich |
Cat# H1009, CAS: 7722-84-1 |
Allyl isothiocyanate (Mustard oil) |
Sigma-Aldrich |
Cat# W203408, CAS: 57-06-7 |
BAPTA, AM, cell permeant chelator |
Thermo Fisher Scientific |
Cat# B1205 |
Peroxy green 1 |
Miller et al., 2007 |
N/A |
Carboplatin |
Sigma-Aldrich |
Cat# C2538, CAS: 41575-94-4 |
Gemcitabine hydrochloride |
Sigma-Aldrich |
Cat# G6423, CAS: 122111-03-9 |
Doxorubicin hydrochloride |
Sigma-Aldrich |
Cat# 44583, CAS: 25316-40-9 |
Paclitaxel |
Sigma-Aldrich |
Cat# T7402, CAS: 33069-62-4 |
CellEvent™ Caspase-3/7 Green Detection Reagent |
Thermo Fisher Scientific |
Cat# C10423
|
N-(6-Aminohexyl)-5-chloro-1-naphthalenesulfonamide hydrochloride (W-7) |
Sigma-Aldrich |
Cat# A3281 CAS: 61714-27-0 |
Trifluoperazine dihydrochloride (TFP) |
Sigma-Aldrich |
Cat# T8516 CAS: 440-17-5 |
PD325901 |
Selleckchem |
Cat# S1036 |
Torin1 |
Tocris |
Cat# 4247 |
KN-93 |
Santa Cruz Biotechnology |
Cat# sc-202199 CAS: 139298-40-1 |
A-1210477 |
Selleckchem |
Cat# S7790 |
Critical Commercial Assays |
Active Ras Pull-Down and Detection Kit |
Thermo Fisher Scientific |
Cat# 16117 |
Mem-PER™ Plus Membrane Protein Extraction Kit |
Thermo Fisher Scientific |
Cat# 89842 |
Fluo-4 NW Calcium Assay Kit |
Thermo Fisher Scientific |
Cat# F36206
|
Trichrome Stain |
Abcam |
Cat# ab150686 |
GSH/GSSG-Glo™ Assay |
PROMEGA |
Cat# V6611 |
Deposited Data |
RNA-seq, gene alteration, paired clinical feature, and RPPA data for tumors and corresponding normal tissues |
TCGA |
https://gdac.broadinstitute.org or http://www.cbioportal.org
|
Normalized gene expression data and paired clinical feature data including survival |
METABRIC |
European Genome-phenome Archive: EGAD00010000210, EGAD0001000021 |
Expression dataset for MPNST |
Miller et al., 2009 |
GEO: GSE14038
|
RNA-seq data for HCI PDX models |
This paper |
GEO: GSE113476
|
Experimental Models: Cell Lines |
MCF-10A |
Laboratory of Dennis Slamon |
N/A |
HCC1569 |
Laboratory of Dennis Slamon |
N/A |
HCC38 |
Laboratory of Dennis Slamon |
N/A |
HCC202 |
Laboratory of Dennis Slamon |
N/A |
HCC70 |
Laboratory of Dennis Slamon |
N/A |
HCC1500 |
Laboratory of Dennis Slamon |
N/A |
MDAMB-175 |
Laboratory of Dennis Slamon |
N/A |
T47D |
Laboratory of Dennis Slamon |
N/A |
BT-549 |
Laboratory of Dennis Slamon |
N/A |
H1792 |
ATCC |
Cat# CRL-5895; RRID: CVCL_1495 |
H647 |
ATCC |
Cat# CRL-5834; RRID: CVCL_1574 |
A549 |
ATCC |
Cat# CCL-185; RRID: CVCL_0023 |
H358 |
ATCC |
Cat# CRL-5807; RRID: CVCL_1559 |
H23 |
ATCC |
Cat# CRL-5800; RRID: CVCL_1547 |
sNF96.2 |
ATCC |
Cat# CRL-2884; RRID: CVCL_K281 |
90-8TL |
Laboratory of Eric Legius |
N/A |
88-14 |
Laboratory of Jonathan Fletcher |
N/A |
S462 |
Laboratory of Eric Legius |
N/A |
EL-12-58 |
Johnson et al., 2016 |
N/A |
HCI-002 |
This paper |
N/A |
Experimental Models: Organisms/Strains |
Mouse: NOD-Rag1null
Il22rgnull (NRG) |
Jackson Laboratory |
Stock#: 007799 |
Oligonucleotides |
Primers for the construction of TRPA1 mutants: listed in Table S2
|
This paper |
N/A |
Primers for the construction of LentiCRISPR plasmids: listed in Table S4
|
This paper |
N/A |
Primers for quantitative PCR: listed in Table S5
|
This paper |
N/A |
Recombinant DNA |
pENTR223.1-TRPA1 |
GE Healthcare |
Cat# OHS5893-202502591 |
pC1-HyPer-2 |
Addgene |
Cat# 42211 |
pC1-HyPer-C199S |
Addgene |
Cat# 42213 |
pLX304 |
Addgene |
Cat# 25890 |
pCDH (Puromycin resistance) |
System Bioscience |
Cat# CD510B-1 |
pCDH (Hygromycin B resistance) |
System Bioscience |
Cat# CD515B-1 |
pCI-neo-TRPA1 |
Takahashi et al., 2011 |
N/A |
pCI-neo-TRPA1 mutant |
This paper |
N/A |
pCDNA3.1-Flag-NRF2 |
Addgene |
Cat# 36971 |
LentiCRISPR plasmids |
This paper |
N/A |
pLX304-TRPA1 |
This paper |
N/A |
pLX304-MCL-1 |
GE Healthcare |
Cat# OHS6085-213573654 |
pCDH-Hyper-2 (Puro and Hygromycin B) |
This paper |
N/A |
pCDH-HyPer-C199S (Puro and Hygromycin B) |
This paper |
N/A |
shRNA: TRPA1 #1 |
The RNAi Consortium |
TRCN0000044801 |
shRNA: TRPA1 #2 |
The RNAi Consortium |
TRCN0000434290 |
shRNA: GFP |
Addgene |
30323 |
Inducible shRNA: NFE2L2 #1 |
GE Healthcare |
V3THS_306092 |
Inducible shRNA: NFE2L2 #2 |
GE Healthcare |
V3THS_306096 |
Inducible shRNA: non-silencing control |
GE Healthcare |
RHS4743 |
SMARTpool siRNA for PYK2 |
GE Healthcare |
L-003165-00 |
SMARTpool siRNA for NFE2L2 |
GE Healthcare |
L-003755-00 |
SMARTpool siRNA for TRPM2 |
GE Healthcare |
L-004193-00 |
siGENOME Non-Targeting siRNA Pool #2 |
GE Healthcare |
D-001206-14 |
Software and Algorithms |
GraphPad Prism 7.0 |
GraphPad Prism Software |
N/A |
Cluster 3.0 |
N/A |
http://bonsai.hgc.jp/~mdehoon/software/cluster/software.htm |
Java TreeView |
N/A |
http://jtreeview.sourceforge.net/ |
Metafluor |
Molecular Devices |
N/A |
Other |
RPPA assay |
RPPA Core Facility - MD Anderson Cancer Center |
N/A |