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. Author manuscript; available in PMC: 2019 Jun 11.
Published in final edited form as: Cancer Cell. 2018 May 24;33(6):985–1003.e7. doi: 10.1016/j.ccell.2018.05.001
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Rabbit polyclonal antibody anti-TRPA1 Novus Cat# NB110-40763; RRID: AB_715124
Rabbit polyclonal antibody anti-TRPA1 Sigma-Aldrich Cat# HPA026630; RRID: AB_1858360
Rabbit polyclonal antibody anti-Cleaved Caspase-3 (Asp175) Cell Signaling Technology Cat# 9661; RRID: AB_2341188
Mouse monoclonal antibody anti-Ki-67 Dako Cat# M7240; RRID: AB_2142367
Mouse monoclonal anti-Flag M2 antibody Sigma-Aldrich Cat# F1804; RRID: AB_259529
Mouse monoclonal antibody anti-beta-Actin Sigma-Aldrich Cat# A1978; RRID: AB_476692
Rabbit polyclonal antibody anti-Phospho-4E-BP1 (Ser65) Cell Signaling Technology Cat# 9451; RRID: AB_330947
Rabbit monoclonal antibody anti-4E-BP1 Cell Signaling Technology Cat# 9644S; RRID: AB_10691384
Mouse monoclonal antibody anti-Phospho-S6 Ribosomal Protein (Ser240) Dako Cat# M7300; RRID: AB_2182542
Rabbit monoclonal antibody anti-S6 Ribosomal Protein Cell Signaling Technology Cat# 2217; RRID: AB_331355
Rabbit monoclonal antibody anti-Phospho-AKT (Thr308) Cell Signaling Technology Cat# 4056; RRID: AB_331163
Mouse monoclonal antibody anti-AKT Cell Signaling Technology Cat# 2920; RRID: AB_1147620
Rabbit monoclonal antibody anti-Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) Cell Signaling Technology Cat# 4370; RRID: AB_2315112
Rabbit polyclonal antibody anti-p44/42 MAPK (Erk1/2) Cell Signaling Technology Cat# 9102; RRID: AB_330744
Rabbit polyclonal antibody anti-Phospho-PYK2 (Tyr402) Cell Signaling Technology Cat# 3291S; RRID: AB_2300530
Mouse monoclonal antibody anti-PYK2 Cell Signaling Technology Cat# 3480S; RRID: AB_2174093
Rabbit monoclonal antibody anti-MCL-1 Cell Signaling Technology Cat# 5453S; RRID: AB_10694494
Rabbit polyclonal antibody anti-Phospho-SRC (Tyr416) Cell Signaling Technology Cat# 2101; RRID: AB_331697
Rabbit polyclonal antibody anti-SRC Cell Signaling Technology Cat# 2108; RRID: AB_331137
Mouse monoclonal antibody anti-Methylglyoxal Cell Biolabs, Inc Cat# STA-011
Rabbit polyclonal antibody anti-4 Hydroxynonenal Abcam Cat# ab46545; RRID: AB_722490
Mouse monoclonal antibody anti-8 Hydroxyguanosine Abcam Cat# ab48508; RRID: AB_867461
Biological Samples
Unstained breast cancer tissue arrays US Biomax BR1504a
Unstained normal breast tissue arrays US Biomax BN08111
Unstained lung cancer tissue arrays US Biomax BC041115d
Unstained normal lung tissue arrays US Biomax LCN241
Chemicals, Peptides, and Recombinant Proteins
AP-18 Sigma-Aldrich Cat# A7232, CAS: 55224-94-7
AM-0902 Schenkel et al., 2016 N/A
Fura-2 Thermo Fisher Scientific Cat# F1201
N-Acetyl-L-cysteine Sigma-Aldrich Cat# A7250, CAS: 616-91-1
Hydrogen peroxide solution Sigma-Aldrich Cat# H1009, CAS: 7722-84-1
Allyl isothiocyanate (Mustard oil) Sigma-Aldrich Cat# W203408, CAS: 57-06-7
BAPTA, AM, cell permeant chelator Thermo Fisher Scientific Cat# B1205
Peroxy green 1 Miller et al., 2007 N/A
Carboplatin Sigma-Aldrich Cat# C2538, CAS: 41575-94-4
Gemcitabine hydrochloride Sigma-Aldrich Cat# G6423, CAS: 122111-03-9
Doxorubicin hydrochloride Sigma-Aldrich Cat# 44583, CAS: 25316-40-9
Paclitaxel Sigma-Aldrich Cat# T7402, CAS: 33069-62-4
CellEvent Caspase-3/7 Green Detection Reagent Thermo Fisher Scientific Cat# C10423
N-(6-Aminohexyl)-5-chloro-1-naphthalenesulfonamide hydrochloride (W-7) Sigma-Aldrich Cat# A3281 CAS: 61714-27-0
Trifluoperazine dihydrochloride (TFP) Sigma-Aldrich Cat# T8516 CAS: 440-17-5
PD325901 Selleckchem Cat# S1036
Torin1 Tocris Cat# 4247
KN-93 Santa Cruz Biotechnology Cat# sc-202199 CAS: 139298-40-1
A-1210477 Selleckchem Cat# S7790
Critical Commercial Assays
Active Ras Pull-Down and Detection Kit Thermo Fisher Scientific Cat# 16117
Mem-PER Plus Membrane Protein Extraction Kit Thermo Fisher Scientific Cat# 89842
Fluo-4 NW Calcium Assay Kit Thermo Fisher Scientific Cat# F36206
Trichrome Stain Abcam Cat# ab150686
GSH/GSSG-Glo Assay PROMEGA Cat# V6611
Deposited Data
RNA-seq, gene alteration, paired clinical feature, and RPPA data for tumors and corresponding normal tissues TCGA https://gdac.broadinstitute.org or http://www.cbioportal.org
Normalized gene expression data and paired clinical feature data including survival METABRIC European Genome-phenome Archive: EGAD00010000210, EGAD0001000021
Expression dataset for MPNST Miller et al., 2009 GEO: GSE14038
RNA-seq data for HCI PDX models This paper GEO: GSE113476
Experimental Models: Cell Lines
MCF-10A Laboratory of Dennis Slamon N/A
HCC1569 Laboratory of Dennis Slamon N/A
HCC38 Laboratory of Dennis Slamon N/A
HCC202 Laboratory of Dennis Slamon N/A
HCC70 Laboratory of Dennis Slamon N/A
HCC1500 Laboratory of Dennis Slamon N/A
MDAMB-175 Laboratory of Dennis Slamon N/A
T47D Laboratory of Dennis Slamon N/A
BT-549 Laboratory of Dennis Slamon N/A
H1792 ATCC Cat# CRL-5895; RRID: CVCL_1495
H647 ATCC Cat# CRL-5834; RRID: CVCL_1574
A549 ATCC Cat# CCL-185; RRID: CVCL_0023
H358 ATCC Cat# CRL-5807; RRID: CVCL_1559
H23 ATCC Cat# CRL-5800; RRID: CVCL_1547
sNF96.2 ATCC Cat# CRL-2884; RRID: CVCL_K281
90-8TL Laboratory of Eric Legius N/A
88-14 Laboratory of Jonathan Fletcher N/A
S462 Laboratory of Eric Legius N/A
EL-12-58 Johnson et al., 2016 N/A
HCI-002 This paper N/A
Experimental Models: Organisms/Strains
Mouse: NOD-Rag1null Il22rgnull (NRG) Jackson Laboratory Stock#: 007799
Oligonucleotides
Primers for the construction of TRPA1 mutants: listed in Table S2 This paper N/A
Primers for the construction of LentiCRISPR plasmids: listed in Table S4 This paper N/A
Primers for quantitative PCR: listed in Table S5 This paper N/A
Recombinant DNA
pENTR223.1-TRPA1 GE Healthcare Cat# OHS5893-202502591
pC1-HyPer-2 Addgene Cat# 42211
pC1-HyPer-C199S Addgene Cat# 42213
pLX304 Addgene Cat# 25890
pCDH (Puromycin resistance) System Bioscience Cat# CD510B-1
pCDH (Hygromycin B resistance) System Bioscience Cat# CD515B-1
pCI-neo-TRPA1 Takahashi et al., 2011 N/A
pCI-neo-TRPA1 mutant This paper N/A
pCDNA3.1-Flag-NRF2 Addgene Cat# 36971
LentiCRISPR plasmids This paper N/A
pLX304-TRPA1 This paper N/A
pLX304-MCL-1 GE Healthcare Cat# OHS6085-213573654
pCDH-Hyper-2 (Puro and Hygromycin B) This paper N/A
pCDH-HyPer-C199S (Puro and Hygromycin B) This paper N/A
shRNA: TRPA1 #1 The RNAi Consortium TRCN0000044801
shRNA: TRPA1 #2 The RNAi Consortium TRCN0000434290
shRNA: GFP Addgene 30323
Inducible shRNA: NFE2L2 #1 GE Healthcare V3THS_306092
Inducible shRNA: NFE2L2 #2 GE Healthcare V3THS_306096
Inducible shRNA: non-silencing control GE Healthcare RHS4743
SMARTpool siRNA for PYK2 GE Healthcare L-003165-00
SMARTpool siRNA for NFE2L2 GE Healthcare L-003755-00
SMARTpool siRNA for TRPM2 GE Healthcare L-004193-00
siGENOME Non-Targeting siRNA Pool #2 GE Healthcare D-001206-14
Software and Algorithms
GraphPad Prism 7.0 GraphPad Prism Software N/A
Cluster 3.0 N/A http://bonsai.hgc.jp/~mdehoon/software/cluster/software.htm
Java TreeView N/A http://jtreeview.sourceforge.net/
Metafluor Molecular Devices N/A
Other
RPPA assay RPPA Core Facility - MD Anderson Cancer Center N/A