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. 2018 Aug 13;19(Suppl 6):566. doi: 10.1186/s12864-018-4920-6

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© The Author(s) 2018

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Comparison of the fully constructed repeats in Repbase for the two version of REPdenovo. Bullet circles: hit Repbase repeats constructed by both versions of REPdenovo. Empty circles: hit Repbase repeats constructed only by the new version. Figure in the right-up corner is zoomed in the red rectangle region. There are 154(out of all the 220) bullet circles and 57 empty circles. Most of these 57 ones fall in higher divergent and lower copy number regions (the regions of blue rectangles)