Table 1.
Genealogical simulation software and parameter settings for Scenarios I–V
| Scenario | Software | Population size 
|
Crown age  (years) |
Number of loci 
|
Sample size 
|
Migration rate  (individuals per generation) |
Speciation rate  (speciation events per generation) |
|---|---|---|---|---|---|---|---|
| I | makesamples | 10 , 10 , 10
|
— | 1, 2, 5, 10, 20 | 2, 4, 10, 20, 40 | — | — |
| II | SimPhy | 10 , 10 , 10
|
10 , 10 , 10
|
1, 2, 5, 10, 20 | 1, 2, 5, 10, 20 | — | — |
| III | makesamples | 10
|
10
|
1, 2, 5, 10, 20 | 10 | 0.1, 1, 10, 10 , 10
|
— |
| IV | SimPhy | 10
|
10
|
1, 2, 5, 10, 20 | 10 | — | 10 , 10 , 10 , 10
|
| V | makesamples | 10
|
10
|
1, 2, 5, 10, 20 | 10 | 0.1, 1, 10, 10 , 10
|
— |