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. 2018 Aug 14;9:312. doi: 10.3389/fgene.2018.00312

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Copyright © 2018 Cairns, Jokela, Hultman, Tamminen, Virta and Hiltunen.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Functional characteristics of model community strains. Both phenotypic (empty circle) and bioinformatically predicted (filled circle) susceptibility to antibiotics (upper panel) and ability to grow on a carbon source (lower panel) are shown. Matching between carbon source utilization phenotypes and functions predicted from genome sequences was only performed for 4-hydroxy benzoic acid, glucose-1-phosphate, D-galactonic acid γ-lactone, D-galacturonic acid and α-D-lactose where filled circles represent the presence of genomic modules for benzoic acid, glucose, galactonic acid, galacturonic acid and lactose metabolism, respectively. The strains are depicted in descending order of total number of carbon sources utilized. MIC, minimum inhibitory concentration.