Table 1.
Status of current human, porcine, equine, and bovine haemoglobin gene annotations in the Ensembl, NCBI RefSeq, and UCSC databases.
| Ensembl | NCBI RefSeq | UCSC table browser | |
|---|---|---|---|
| Homo sapiens | |||
| Annotation release | Human release 92 (April 2018)a | NCBI Homo sapiens Annotation Release 109 (March 2018)b | hg38.refGene annotation track (last updated on May 2018)c, d, e |
| Genome assembly used to derive annotation | GRCh38.p12, GCA_000001405.27, December 2017 | GRCh38.p12, GCF_000001405.38, December 2017 | GRCh38, GCF_000001405.15, December 2013 |
| HBA1 | Annotated with gene ID ENSG00000206172 | Annotated with Entrez Gene ID 3039 | Annotated with Entrez Gene ID 3039 |
| HBA2 | Annotated with gene ID ENSG00000188536 | Annotated with Entrez Gene ID 3040 | Annotated with Entrez Gene ID 3040 |
| HBB | Annotated with gene ID ENSG00000244734 | Annotated with Entrez Gene ID 3043 | Annotated with Entrez Gene ID 3043 |
| Sus scrofa | |||
| Annotation release | Pig release 92 (April 2018)a | NCBI Sus scrofa Annotation Release 106 (May 2017)b | susScr3.refGene annotation track (last updated on May 2018)d, e |
| Genome assembly used to derive annotation | Sscrofa11.1, GCA_000003025.6, February 2017 | Sscrofa11.1, GCF_000003025.6, February 2017 | Sscrofa11.1, GCF_000003025.6, February 2017 |
| LOC110259958 (HBA) | Absent from current annotation release, accessible via online search with ID 110259958.1 | Annotated with Entrez Gene ID 110259958 | Absent |
| LOC100737768 (HBA) | Absent from current annotation release, accessible via online search with ID 100737768.1 | Annotated with Entrez Gene ID 100737768 | Absent |
| HBB | Annotated with gene ID ENSSSCG00000014725 | Annotated with Entrez Gene ID 407066 | Annotated with Entrez Gene ID 407066 |
| Equus caballus | |||
| Annotation release | Horse release 92 (April 2018)a | NCBI Equus caballus Annotation Release 103 (January 2018)b | equCab2.refGene annotation track (last updated on May 2018)d, e |
| Genome assembly used to derive annotation | EquCab 2, GCA_000002305.1, September 2007 | EquCab3, GCF_002863925.1, May 2018 | EquCab 2, GCA_000002305.1, September 2007 |
| HBA (also known as HBA1) | Absent | Annotated with Entrez Gene ID 100036557 | Annotated with Entrez Gene ID 100036557 |
| HBA2 | Absent | Annotated with Entrez Gene ID 100036558 | Annotated with Entrez Gene ID 100036558 |
| HBB | Annotated with gene ID ENSECAG00000010020 | Annotated with Entrez Gene ID 100054109 | Annotated with Entrez Gene ID 100054109 |
| Bos taurus | |||
| Annotation release | Cow release 92 (April 2018)a | NCBI Bos taurus Annotation Release 106 (May 2018)b | bosTau8.refGene annotation track (last updated on May 2018)d, e |
| Genome assembly used to derive annotation | UMD3.1, GCA_000003055.3, November 2009 | ARS-UCD1.2, GCF_002263795.1, April 2018 | UMD3.1.1, GCA_000003055.4, June 2014 |
| HBA1 | Annotated as GLNC1 with ID ENSBTAG00000026417 | Annotated with Entrez gene ID 100140149 | Absent |
| HBA (also known as HBA2) | Annotated as GLNC1 with ID ENSBTAG00000026418 | Annotated with Entrez Gene ID 512439 | Annotated with Entrez Gene ID 512439 |
| HBB | Annotated with gene ID ENSBTAG00000038748 | Annotated with Entrez Gene ID 280813 | Annotated with Entrez Gene ID 280813 |